PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023872404.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family HD-ZIP
Protein Properties Length: 278aa    MW: 31847.6 Da    PI: 6.6383
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023872404.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.2e-1854106456
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++++ eq+++Le+ Fe ++++  e++ +LA++l+L+ rqV +WFqNrRa++k
  XP_023872404.1  54 KRRLSLEQVKALERSFEVENKLEPERKVKLAAELSLQPRQVAIWFQNRRARWK 106
                     557999**********************************************9 PP

2HD-ZIP_I/II129.31.6e-4153144293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     kkrrls eqvk+LE+sFe e+kLeperKv+la eL lqprqva+WFqnrRAR+ktkqlE+dy +Lk++ydalk ++++Le+e+++L+++l+e
  XP_023872404.1  53 KKRRLSLEQVKALERSFEVENKLEPERKVKLAAELSLQPRQVAIWFQNRRARWKTKQLERDYGVLKANYDALKLDHHNLEQENKALTSKLRE 144
                     9**************************************************************************************99986 PP

Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    
MKRFSSSDSL AALISISPPK ENSTYCYSED FHAMLNRLEH EDLEEETGLV LGKKRRLSLE  60
QVKALERSFE VENKLEPERK VKLAAELSLQ PRQVAIWFQN RRARWKTKQL ERDYGVLKAN  120
YDALKLDHHN LEQENKALTS KLRELKSKVC RASSESNHSV NEQSPISESD NNVSEQSKGH  180
DLRAENSNKA VSVDSDSNGI MKEESKMKFT LSFNGSSSYS NPLVNRLQFS DPRTVVPAKA  240
YQPQIVKMEE QSLFSTEDSC NFFSVDQAPT LHWYLPEQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15382KKRRLSLEQVKALERSFEVENKLEPERKVK
2101109RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.13e-49HD-ZIP family protein