PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023872404.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 278aa MW: 31847.6 Da PI: 6.6383 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.5 | 2.2e-18 | 54 | 106 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++ eq+++Le+ Fe ++++ e++ +LA++l+L+ rqV +WFqNrRa++k XP_023872404.1 54 KRRLSLEQVKALERSFEVENKLEPERKVKLAAELSLQPRQVAIWFQNRRARWK 106 557999**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 129.3 | 1.6e-41 | 53 | 144 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrrls eqvk+LE+sFe e+kLeperKv+la eL lqprqva+WFqnrRAR+ktkqlE+dy +Lk++ydalk ++++Le+e+++L+++l+e XP_023872404.1 53 KKRRLSLEQVKALERSFEVENKLEPERKVKLAAELSLQPRQVAIWFQNRRARWKTKQLERDYGVLKANYDALKLDHHNLEQENKALTSKLRE 144 9**************************************************************************************99986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence |
MKRFSSSDSL AALISISPPK ENSTYCYSED FHAMLNRLEH EDLEEETGLV LGKKRRLSLE 60 QVKALERSFE VENKLEPERK VKLAAELSLQ PRQVAIWFQN RRARWKTKQL ERDYGVLKAN 120 YDALKLDHHN LEQENKALTS KLRELKSKVC RASSESNHSV NEQSPISESD NNVSEQSKGH 180 DLRAENSNKA VSVDSDSNGI MKEESKMKFT LSFNGSSSYS NPLVNRLQFS DPRTVVPAKA 240 YQPQIVKMEE QSLFSTEDSC NFFSVDQAPT LHWYLPEQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 53 | 82 | KKRRLSLEQVKALERSFEVENKLEPERKVK |
2 | 101 | 109 | RRARWKTKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G40060.1 | 3e-49 | HD-ZIP family protein |