PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023872371.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 336aa MW: 38099.8 Da PI: 6.1078

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023872371.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.8	3.9e-13	128	179	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++++k+L+ XP_023872371.1 128 QRMTHIAVERNRRKQMNEYLSVLRSLMPPS---YVQRGDQASIIGGAINFVKELE 179 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence
MALEAVVYPQ DPFSFACKDF YSWSYDLALQ EEDKALLGIH SLEQSLHANF DYSSSPSVMQ 60 NAHKEYYDPN TSSPEACTDH TIDQYSFPGE VQLYPLPSKE AFATTTTTGR RKRRRIKCSK 120 NKEEIENQRM THIAVERNRR KQMNEYLSVL RSLMPPSYVQ RGDQASIIGG AINFVKELEQ 180 LLQSMEVHKR AKQEPDTNGF SSSSSPFAQF FSFPQYSTRA TQCNDSPATA TANESMAQQQ 240 QQNQWAVADI EVTMVESHAN LKILSKQQPR QLLKMVAGLQ SLRLSILHLN VTTIDQMVLY 300 SVSVKVEEGC QLNTVDEIAT AVNQMLRRIQ EESAFS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	115	RKRRR
2	112	116	KRRRI
3	129	140	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	2e-93	bHLH family protein