PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023872295.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MIKC_MADS
Protein Properties Length: 272aa    MW: 31338.6 Da    PI: 5.052
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023872295.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF885.1e-281059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    +ie+ks rqvtfskRrng++KKA ELS+LCd+e+a+ ifsstgklyey+s
  XP_023872295.1 10 QIEDKSSRQVTFSKRRNGLMKKARELSILCDVEAALFIFSSTGKLYEYCS 59
                    79**********************************************96 PP
2K-box22.54.8e-0982162989
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                     +++ + ++++ e +  + e + Lq  qR++  +++e+L++ eL +Le++L+    + R +K++ l ++  ++ ++  +++e
  XP_023872295.1  82 NSSDQKQKYDAECSDHQTEANLLQMIQRNIEAQNIEQLNMIELTRLEKELDALYIETRFHKEKQLSAEKTRMEEMAAMINE 162
                     6778899*************************************************************9999988887766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    
MKRGKLRLNQ IEDKSSRQVT FSKRRNGLMK KARELSILCD VEAALFIFSS TGKLYEYCSS  60
DSVGKLLERY RRHASKKVVV CNSSDQKQKY DAECSDHQTE ANLLQMIQRN IEAQNIEQLN  120
MIELTRLEKE LDALYIETRF HKEKQLSAEK TRMEEMAAMI NESPELALPS SGSELQELHT  180
QEKQLSEEKA FMEEMAAMIM ENPDFASTSS GTELLERHTQ EKQLSEEKTF MEEMAAMIPD  240
YPSPSFGTEL LELYTHGINY ATPLQQGMPH LY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.11e-31MIKC_MADS family protein