PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023872247.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

RAV

Protein Properties

Length: 379aa MW: 42038.1 Da PI: 9.2887

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023872247.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	43.9	6e-14	68	116	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAaka++ a+++++g XP_023872247.1 68 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAAKAYDIAAQRFRG 116 89**9888.8*****3.....5******99***********98 PP
2	B3	96.7	1.5e-30	205	309	1	95
EEEE-..-HHHHTT-EE--HHH.HTT..........---.....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkke...esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+ tpsdv+k++rlv+pk++ae+h + ++ l +ed g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F XP_023872247.1 205 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqnsgsnsT---TtssKGLLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSF 296 89************************999976552...13337789********************************************* PP EE-SSSEE..EEE CS B3 83 kldgrsefelvvk 95 +++ + +l++ XP_023872247.1 297 HRSTGPDNQLFIE 309 *876566666665 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MDGSCIDEST TSDSISISPA TTQSPFPSPT NITKSPESLC RVGSGTTSTL ILDSESGIEA 60 ESRKLPSSKY KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE DEAAKAYDIA AQRFRGRDAV 120 TNFKPCGTTD HHPHHQEDDI ETLFLNSHSK AEIVDMLRKH TYNDELEQSK RNYGLDSTRR 180 SKGGSLGQGL LERVNYSMKA REQLFEKAVT PSDVGKLNRL VIPKQHAEKH FPLQNSGSNS 240 TTTSSKGLLL NFEDVGGKVW RFRYSYWNSS QSYVLTKGWS RFVKEKNLKA GDIVSFHRST 300 GPDNQLFIEW KARAGSSSSS NPVQMVRLFG VNILKIPGVG VVESSNNCNI GGCNGGKRMR 360 EMELLALECS KKQRIVGAL

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MDGSCIDEST TSDSISISPA TTQSPFPSPT NITKSPESLC RVGSGTTSTL ILDSESGIEA  60
ESRKLPSSKY KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE DEAAKAYDIA AQRFRGRDAV  120
TNFKPCGTTD HHPHHQEDDI ETLFLNSHSK AEIVDMLRKH TYNDELEQSK RNYGLDSTRR  180
SKGGSLGQGL LERVNYSMKA REQLFEKAVT PSDVGKLNRL VIPKQHAEKH FPLQNSGSNS  240
TTTSSKGLLL NFEDVGGKVW RFRYSYWNSS QSYVLTKGWS RFVKEKNLKA GDIVSFHRST  300
GPDNQLFIEW KARAGSSSSS NPVQMVRLFG VNILKIPGVG VVESSNNCNI GGCNGGKRMR  360
EMELLALECS KKQRIVGAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13260.1	1e-137	RAV family protein