PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023872079.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
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Family | MYB | ||||||||
Protein Properties | Length: 267aa MW: 31079 Da PI: 6.7151 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.5 | 3.6e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd +l +++++G +W+ ++ g+ R++k+c++rw +yl XP_023872079.1 14 KGAWSVEEDNKLRAYIQRFGHWNWRELPKFAGLSRCGKSCRLRWMNYL 61 79******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 49.2 | 1.2e-15 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T+eE+ +++++++lG++ W+ Ia+ + gRt++++k++w+ + XP_023872079.1 67 RGNYTEEEERMIIKLHEELGNK-WSMIAASLT-GRTDNDIKNHWHAH 111 899*******************.********9.***********976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence |
MVRTPFYDKN GLKKGAWSVE EDNKLRAYIQ RFGHWNWREL PKFAGLSRCG KSCRLRWMNY 60 LRPGVKRGNY TEEEERMIIK LHEELGNKWS MIAASLTGRT DNDIKNHWHA HLKKCTKNNP 120 TISKMKTLSN EAYQHDADLA RKTETDNYVS SSPSYQVMES SQLPLETSSI EFPSLSFDNA 180 PLFGINWIAE DNLTTLETLL EQSFSDFWTK PFIMDDIYIH NKYPVYLAEG GFCTSQPCYN 240 EGIDSIYKAM HDVKNYQGIN EDPYLLN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 8e-53 | MYB family protein |