PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023870642.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family SBP
Protein Properties Length: 320aa    MW: 34891.5 Da    PI: 9.1114
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023870642.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.92.2e-4125101278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     C v+gC++dls++++yhrrhkvCe hsk+p+v+++g+eqrfCqqCsrfh+l efDe+krsCr+rL++hn+rrrk+q+
  XP_023870642.1  25 CLVDGCNSDLSKCRDYHRRHKVCELHSKTPKVTIRGQEQRFCQQCSRFHSLGEFDEGKRSCRKRLDGHNRRRRKAQP 101
                     **************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MESSSSSGST KRARAPVNGT QVPLCLVDGC NSDLSKCRDY HRRHKVCELH SKTPKVTIRG  60
QEQRFCQQCS RFHSLGEFDE GKRSCRKRLD GHNRRRRKAQ PDSLSLNSGR FHSSYQGTRI  120
LSFTSPHIFS QGAVVSSPWT GAVKAEPDAA GLYNSYSQLN YSDRKNSINP GSLYDNYKGG  180
KQFPFSQGSS SSLLGASISQ PLLDANFASS NDSRSQKVFS NGLNQVIDSD CALSLLSSTP  240
TETRQVGLSH MVQSNPIHTG QSLVPSLHYN GFGMEVKENS SALGSSNNNI HCQGMFSIGP  300
HDSDGSSATG PNQTLSFLWE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.14e-53SBP family protein