PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023870478.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 1402aa MW: 158900 Da PI: 5.0185

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023870478.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18	8.2e-06	715	737	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F+r nL+ H r H XP_023870478.1 715 FVCEICKKGFKREPNLQLHRRGH 737 89******************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 1402 aa Download sequence
MSKLINLKHL IVEECPTYPC GFPRGIGRLS SLTKLSHFYV GGKDDSQRCG LGELKYLNHL 60 QGALTIYGLG NVVNACEAKN AELNKKIGLR DLCLDFIENG GRIEDGGRME TDVSVLNALE 120 PPQGLEKLQI KHYWGTTMFP NWMMSLAKLK SFTLTGGLKL ERLPPLGKLQ FLEHLIIDGC 180 TLAFKKLGVE FLGIESENKK EGIIKIFPNL KTLWFRVLYE WEEWIGIGGQ EEEDCIIIMP 240 CLQKLEICIC PKLKSLPDFL FKTSLQEFEV IKSPILSERY QRGTGEDWAK ISHIPNIKID 300 FIEVQREGQD VIRRDDEEEF DEEEPDEEEQ SEDEELMNSP AGRITQIVYK GSHNHPKPQP 360 QLAIKPAKES ISDSEDQGSP CVVELTGPGD SENEDGVGDE PNLKKRTTYA VTEPKIIKQT 420 RSEVCASNGS PRQASLVLSS FEDMLSWPKM WHKLTANPTT QAYLQNNDFV RMMHELHNNY 480 LKDKRVIQAL GVLLNINIWT PTSVDAEIPQ SSSLLSLQPE RKKSAETELA EELDLMELTA 540 DEGMDRESQA CKEQEMGNAA YTKNDFDTAI AHYTKVMELD DGNISCLMNR AVAYLAIGQY 600 DECIKDCDEV VERGRQLKSD SKMIAITLSR KGTALVKMAK HSQDYELAIE TFKKALSEHC 660 IPGTLKKLND AEQAKRELGQ QEYFDTKLAN EEHEKDPNVE VVALSPKTLL VTNEFVCEIC 720 KKGFKREPNL QLHRRGHNLS WKPSQGSVST VDSSPPMPAP AQAQAQLAPP QSTGAISLVL 780 PIKSPEETSE NEIASEHHGM EIDIEEVKMT DSSEQKKFEI EEMGNDASQT RQPDVIQVED 840 MQLQASSTLK PQRVLFDVNA VNILKSSGLI QSQIEDVEMK SEASEQRGFF LMQGGLGLTM 900 LPKDEDWKNA KEIYLMDNEL SILPENPRCP NLSALFLPRN YKLRTIPPSF FDHMPALQIL 960 NLSRTSIKSL PDSIIKLVSL KRLFLNNCHR LMTLSPKVGD LKQLEVIDLE GAKIMDLPME 1020 IKELTNLKYL EVSFYGYISN GNGKKAMQSN AVVPCGVISA LSLLEELNID VNPDDERWDA 1080 RVEDIVTEIC TLKRLETLKF YFPRVELLRH FQWNSLTLSY FRFTIGRHVK RIMSRVPCDV 1140 EFELERWGKC LKYINGVGVP GDIKKVLQHA VAFFLDRHAT VKKLSDFGLR NMKQLKCCVM 1200 GECNEVQVIV DEEDDARKIV SDSYGTERIV LGSLEYLYIY YMKNLRSIWE GSVQKNSLFL 1260 LKSLTLRTCP QLTTIFTQGL LDNLCNLEEL KVEDCPSIKS IVSCEISAEH KTSYFLPNLK 1320 KISLHYMPGL VSISSGLHIA PKLEWLSFYN CPDLKNPLID EISSQDLKKI KGERSWWEAL 1380 EWSNSCPSYL EEIFVLIDIR DC

Sequence ? help Back to Top

Protein Sequence Length: 1402 aa Download sequence

MSKLINLKHL IVEECPTYPC GFPRGIGRLS SLTKLSHFYV GGKDDSQRCG LGELKYLNHL  60
QGALTIYGLG NVVNACEAKN AELNKKIGLR DLCLDFIENG GRIEDGGRME TDVSVLNALE  120
PPQGLEKLQI KHYWGTTMFP NWMMSLAKLK SFTLTGGLKL ERLPPLGKLQ FLEHLIIDGC  180
TLAFKKLGVE FLGIESENKK EGIIKIFPNL KTLWFRVLYE WEEWIGIGGQ EEEDCIIIMP  240
CLQKLEICIC PKLKSLPDFL FKTSLQEFEV IKSPILSERY QRGTGEDWAK ISHIPNIKID  300
FIEVQREGQD VIRRDDEEEF DEEEPDEEEQ SEDEELMNSP AGRITQIVYK GSHNHPKPQP  360
QLAIKPAKES ISDSEDQGSP CVVELTGPGD SENEDGVGDE PNLKKRTTYA VTEPKIIKQT  420
RSEVCASNGS PRQASLVLSS FEDMLSWPKM WHKLTANPTT QAYLQNNDFV RMMHELHNNY  480
LKDKRVIQAL GVLLNINIWT PTSVDAEIPQ SSSLLSLQPE RKKSAETELA EELDLMELTA  540
DEGMDRESQA CKEQEMGNAA YTKNDFDTAI AHYTKVMELD DGNISCLMNR AVAYLAIGQY  600
DECIKDCDEV VERGRQLKSD SKMIAITLSR KGTALVKMAK HSQDYELAIE TFKKALSEHC  660
IPGTLKKLND AEQAKRELGQ QEYFDTKLAN EEHEKDPNVE VVALSPKTLL VTNEFVCEIC  720
KKGFKREPNL QLHRRGHNLS WKPSQGSVST VDSSPPMPAP AQAQAQLAPP QSTGAISLVL  780
PIKSPEETSE NEIASEHHGM EIDIEEVKMT DSSEQKKFEI EEMGNDASQT RQPDVIQVED  840
MQLQASSTLK PQRVLFDVNA VNILKSSGLI QSQIEDVEMK SEASEQRGFF LMQGGLGLTM  900
LPKDEDWKNA KEIYLMDNEL SILPENPRCP NLSALFLPRN YKLRTIPPSF FDHMPALQIL  960
NLSRTSIKSL PDSIIKLVSL KRLFLNNCHR LMTLSPKVGD LKQLEVIDLE GAKIMDLPME  1020
IKELTNLKYL EVSFYGYISN GNGKKAMQSN AVVPCGVISA LSLLEELNID VNPDDERWDA  1080
RVEDIVTEIC TLKRLETLKF YFPRVELLRH FQWNSLTLSY FRFTIGRHVK RIMSRVPCDV  1140
EFELERWGKC LKYINGVGVP GDIKKVLQHA VAFFLDRHAT VKKLSDFGLR NMKQLKCCVM  1200
GECNEVQVIV DEEDDARKIV SDSYGTERIV LGSLEYLYIY YMKNLRSIWE GSVQKNSLFL  1260
LKSLTLRTCP QLTTIFTQGL LDNLCNLEEL KVEDCPSIKS IVSCEISAEH KTSYFLPNLK  1320
KISLHYMPGL VSISSGLHIA PKLEWLSFYN CPDLKNPLID EISSQDLKKI KGERSWWEAL  1380
EWSNSCPSYL EEIFVLIDIR DC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	4e-20	C2H2 family protein