PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023870350.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family HD-ZIP
Protein Properties Length: 704aa    MW: 77980.9 Da    PI: 7.3765
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023870350.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.61.2e-192580156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +r+ +++t++q+++Le++F+++++p+ ++r++L++ lgL+ +q+k+WFqN+R++ k
  XP_023870350.1 25 KRSYHRHTSNQIQQLEAFFKECPHPDDNQRRQLSRDLGLESKQIKFWFQNKRTQTK 80
                    688999**********************************************9987 PP
2START146.52.4e-462194393206
                     HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
           START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                     a +a++el++++  +ep+W ks+      + +d + ++f++++       ++ea+++s +v+m+++ lve +l++  +W   ++    ka+t++v
  XP_023870350.1 219 AASAMDELIRLMRINEPLWIKSPadggLVLHRDSYDKIFPRANHftnstARVEASKDSEIVTMNAMHLVEMILNSD-KWIDLFPtivtKAKTIQV 312
                     6789*******************987767888888888888777999999**************************.77777777777******* PP

                     ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS
           START  85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdl 172
                     +++g      g +qlm+ ++  lsplvp R+f f+R+++q + g+w+ivd S d  ++++   s  R+ +lpSg++i++++ng+skvtwvehv++
  XP_023870350.1 313 LEPGmlasrsGSVQLMYEQMHILSPLVPpREFFFIRHCQQIELGVWLIVDLSYDCSKEKT---SPSRSWKLPSGCMIQDMPNGYSKVTWVEHVEV 404
                     **************************************************9999998887...56799*************************** PP

                     -SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 173 kgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                     ++++  h l+r l+ s +a ga +wv tl+r ce+
  XP_023870350.1 405 DDKTQtHRLYRDLICSNIAYGAARWVVTLKRMCER 439
                     **9998***************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    
MDFPIGSGGG GSGDEQEQSN ARKGKRSYHR HTSNQIQQLE AFFKECPHPD DNQRRQLSRD  60
LGLESKQIKF WFQNKRTQTK AQHERADNST LRSENDKIQC ENLAIREALK NVICPSCGGP  120
PFGEEERQRS LQKLQIENAQ LKEEHEKVSC LLAKYIGKPI SQIESSTPML GSSMDVPAAI  180
SRNQGPGAAF DQGHGSSSPL TYQFKNISDT EKPLVLETAA SAMDELIRLM RINEPLWIKS  240
PADGGLVLHR DSYDKIFPRA NHFTNSTARV EASKDSEIVT MNAMHLVEMI LNSDKWIDLF  300
PTIVTKAKTI QVLEPGMLAS RSGSVQLMYE QMHILSPLVP PREFFFIRHC QQIELGVWLI  360
VDLSYDCSKE KTSPSRSWKL PSGCMIQDMP NGYSKVTWVE HVEVDDKTQT HRLYRDLICS  420
NIAYGAARWV VTLKRMCERY TYSIDDIAPT GIGGLGVLNL PEGKRSIMKL SHRMVKNFCG  480
MLSMTGKLDF PQLSEVNNSG VRVSVRKRSE PGQPCGMIVS AATSLWLPLP PHHVFSFFRE  540
EKTRVQWDVL SSGNPVHEIA RIASGAHPGK CVSVIRPYIP TENNMLMLQE TCTDTTGSLV  600
VYAPMDIPAI NIAMNGDDSS EVPILPSGFI ISGDGRPETG TIDASTSANA VKSGGSLLTV  660
AFQILVSSPS SLKQLNVESV ATVNTLISST VQRIKTSLNC SGLD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0HD-ZIP family protein