PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026460237.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 343aa MW: 38694.6 Da PI: 7.3533

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026460237.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.8	6.5e-12	92	116	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC f + G+C+yGd+C+FaHg XP_026460237.1 92 FKTRLCAKFKA-GECPYGDNCNFAHG 116 79*******.***********9 PP
2	zf-CCCH	18.2	4.5e-06	154	175	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 +lC+ + + +C+yGd+C+F H XP_026460237.1 154 KLCKKYCNGEECPYGDKCNFLH 175 6899999955************ PP
3	zf-CCCH	34.5	3.4e-11	238	262	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + + C+yGd+C+FaHg XP_026460237.1 238 FKTRICQKWEQ-NDCPYGDKCHFAHG 262 69*******.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MSVPVPQTEF YPQPFTIGSD GNAIFWPQVP IENEQSVNFS EFPPFKKPRT FEETPPPLNS 60 FQNQGMNQQR MMMMMPLPQT IPQNKGMGKL FFKTRLCAKF KAGECPYGDN CNFAHGVEDI 120 RKPPPNWQEI VASHEEGRAT GNWEEDQKLI TRFKLCKKYC NGEECPYGDK CNFLHRDVGK 180 CREDSSRVRE SSAISIGTTG SIGYSVGAGR PDQPDVNGGV MNSISDVNWG IKQQHVYFKT 240 RICQKWEQND CPYGDKCHFA HGVAELYKYG GHNEVETGST TIDLAKFIPD TNDATTPGSN 300 TAVISSKNQV VLAKKCLLNW DRKKLSRIYA DWIEPRSPTN VES

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MSVPVPQTEF YPQPFTIGSD GNAIFWPQVP IENEQSVNFS EFPPFKKPRT FEETPPPLNS  60
FQNQGMNQQR MMMMMPLPQT IPQNKGMGKL FFKTRLCAKF KAGECPYGDN CNFAHGVEDI  120
RKPPPNWQEI VASHEEGRAT GNWEEDQKLI TRFKLCKKYC NGEECPYGDK CNFLHRDVGK  180
CREDSSRVRE SSAISIGTTG SIGYSVGAGR PDQPDVNGGV MNSISDVNWG IKQQHVYFKT  240
RICQKWEQND CPYGDKCHFA HGVAELYKYG GHNEVETGST TIDLAKFIPD TNDATTPGSN  300
TAVISSKNQV VLAKKCLLNW DRKKLSRIYA DWIEPRSPTN VES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	1e-66	C3H family protein