PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_026458957.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 266aa MW: 30054.5 Da PI: 4.3975 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.3 | 1.3e-20 | 41 | 85 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 ++i++ks+ qvtfskRr+g++KKA ELSvL++ ++a+i fs+ g+ XP_026458957.1 41 EKIKDKSKLQVTFSKRRKGLFKKATELSVLTGSQIALIAFSPAGR 85 579***************************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence |
MLPVVHPILF VTQLSVHESS DDDGDEKQRP GGDGRKKIKI EKIKDKSKLQ VTFSKRRKGL 60 FKKATELSVL TGSQIALIAF SPAGRPYVCG NPDIILERFL NNINGEAREI QKDDDEQQRR 120 CLEVEGELEA EKKRGVFLDS LINSDLGAGN DKSCWDTYMN GLSLDELIQM RSDIEQLQKR 180 VSERSHDLQM TSNVASSSCC SSYEDKSLAL MTIPAGNEFV DDDYQNKEMV NEFLFDFDSQ 240 EYEFGIGNTT STDQPITADM FSDDYY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-19 | M-type_MADS family protein |