PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026458400.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 715aa MW: 80533.9 Da PI: 5.7816

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026458400.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.2	4.6e-06	431	449	8	26
GGGGTS--TTTTT-SS-SS CS zf-CCCH 8 ffartGtCkyGdrCkFaHg 26 +++ +G C++G+ C+F+H+ XP_026458400.1 431 RYFVNGLCNRGSECPFSHS 449 78899*************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 715 aa Download sequence
MKGHMYNTVG DLRLLNYFRV QHRSSRVSTP IEISWNPPNP GEIMLGCDGA SMGNPGQAGA 60 GVIFRDSNSA VLGVLCVGLG YQTNFYAEIC AVIYGVMLAK KWGVRDICIR SDSMSFIQAF 120 QRVLLQKALD PAEPEVVEDA LNLLVHIKAL EKNASHRGRY EPTFYGRLLA SMTLSFDASV 180 LILKFGDIGL LRESILMGIL MDTNPLPVRR PFGQDQLFAE NIASYFGGDD ESSVLTGKKE 240 IISMDNLCAY QFWQRAFKDK HRVEQLKHLL KFDEPNTTEI LFPKLEEEWH SFHNLLQPSL 300 HQVSEIYDDI VNSMHRFRPK FMVKANGLPS YYNPNEFEHT CSLGYLQYRD EDLGSEKEDG 360 HINLNLDIEE KTCLTLPYVA PNDFKANFVA EKFATVLKEM RVEHTQNHAE NEQKPIIAMV 420 SHDMGERPLS RYFVNGLCNR GSECPFSHSL QAPKPICKFF FSLQGCRCGA SCFFSHDVNP 480 TMSSITSPNI CTPDSEQPDA ASFLRLLPST PDGCILVLDD NDLHFSSSLS NNGVPAKIIT 540 TTSVPDDSTT DNSLSGVKVL HGLSHPYGTV ISGAGENSIP WKEVHCVLWF ASFQLDKTNI 600 ESVEKQRILL KQFFEYLAIR TLADFLYDMP VVLTMNNVRF SQLQVEKLAR DSFFFLQESF 660 PFDESSFGAF SDVVPMSKPM MVSRPISYVF YICPPTDIQY GNYNAALKKS LYDGK

Sequence ? help Back to Top

Protein Sequence Length: 715 aa Download sequence

MKGHMYNTVG DLRLLNYFRV QHRSSRVSTP IEISWNPPNP GEIMLGCDGA SMGNPGQAGA  60
GVIFRDSNSA VLGVLCVGLG YQTNFYAEIC AVIYGVMLAK KWGVRDICIR SDSMSFIQAF  120
QRVLLQKALD PAEPEVVEDA LNLLVHIKAL EKNASHRGRY EPTFYGRLLA SMTLSFDASV  180
LILKFGDIGL LRESILMGIL MDTNPLPVRR PFGQDQLFAE NIASYFGGDD ESSVLTGKKE  240
IISMDNLCAY QFWQRAFKDK HRVEQLKHLL KFDEPNTTEI LFPKLEEEWH SFHNLLQPSL  300
HQVSEIYDDI VNSMHRFRPK FMVKANGLPS YYNPNEFEHT CSLGYLQYRD EDLGSEKEDG  360
HINLNLDIEE KTCLTLPYVA PNDFKANFVA EKFATVLKEM RVEHTQNHAE NEQKPIIAMV  420
SHDMGERPLS RYFVNGLCNR GSECPFSHSL QAPKPICKFF FSLQGCRCGA SCFFSHDVNP  480
TMSSITSPNI CTPDSEQPDA ASFLRLLPST PDGCILVLDD NDLHFSSSLS NNGVPAKIIT  540
TTSVPDDSTT DNSLSGVKVL HGLSHPYGTV ISGAGENSIP WKEVHCVLWF ASFQLDKTNI  600
ESVEKQRILL KQFFEYLAIR TLADFLYDMP VVLTMNNVRF SQLQVEKLAR DSFFFLQESF  660
PFDESSFGAF SDVVPMSKPM MVSRPISYVF YICPPTDIQY GNYNAALKKS LYDGK