PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026456918.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

MIKC_MADS

Protein Properties

Length: 242aa MW: 28036.7 Da PI: 9.2861

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026456918.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	89.2	2.2e-28	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien +nrqvt+skRr gi+KKA+EL +LCda+v++i+fs+tgk+ ey XP_026456918.1 9 KRIENPTNRQVTYSKRRSGIFKKAKELTILCDAQVCLIMFSNTGKVCEYV 58 79***********************************************7 PP
2	K-box	62.7	1.4e-21	75	167	5	96
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGe.dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 ++ +l+++++e+lq+el+k k+ ++ L++e+R++ G+ dL++L+++eL++Le +L +s++ +R +K ++l +++e+++k++k+++e++k+L + XP_026456918.1 75 TNIDLWASQYETLQEELKKQKQINSRLKKEIRQRTGQdDLNELTFEELRSLEANLLSSVEIVRLRKFHVLGSHTETSKKRNKAMEETHKNLLR 167 45679*****************************637*************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MGRGKIEIKR IENPTNRQVT YSKRRSGIFK KAKELTILCD AQVCLIMFSN TGKVCEYVSP 60 STTMKEFFDR FRRVTNIDLW ASQYETLQEE LKKQKQINSR LKKEIRQRTG QDDLNELTFE 120 ELRSLEANLL SSVEIVRLRK FHVLGSHTET SKKRNKAMEE THKNLLRATY ADREEEFLFY 180 AIPADREGDH NGDYLSSSSS MRRLSISGGD CENSQITFQL QPSQPNLHHA AGGGYLYNQH 240 YA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	7e-59	MIKC_MADS family protein