PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_026456689.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 480aa MW: 52175.5 Da PI: 8.5313 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.9 | 1.3e-11 | 54 | 78 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+C yGdrC+++H++ XP_026456689.1 54 EPNCVYYMRTGFCGYGDRCRYNHPR 78 689********************96 PP | |||||||
2 | zf-CCCH | 35.7 | 1.4e-11 | 99 | 124 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C f+++tGtCk+G Ck++H++ XP_026456689.1 99 GQPVCEFYMKTGTCKFGVYCKYHHPR 124 6799********************96 PP | |||||||
3 | zf-CCCH | 37.7 | 3.3e-12 | 145 | 169 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C+++++tG+Ck+G CkF+H+ XP_026456689.1 145 GETECSYYMKTGQCKFGLACKFHHP 169 7789********************8 PP | |||||||
4 | zf-CCCH | 38.5 | 1.9e-12 | 308 | 334 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G +Ck++H+p XP_026456689.1 308 PGEPECQYYMRTGDCKFGTSCKYHHPP 334 5799*********************97 PP | |||||||
5 | zf-CCCH | 35.8 | 1.4e-11 | 357 | 380 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C f+++ G+Ck+G++CkF H++ XP_026456689.1 357 SPCTFYMQHGICKFGPTCKFDHPM 380 79********************95 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 480 aa Download sequence |
MERFGKNQLI MESDPQFGWN SSSIQLSQTS SLDVAMLQLR LGNQESSYPE RPAEPNCVYY 60 MRTGFCGYGD RCRYNHPRDR SSLVVGAVRQ GGEYPQREGQ PVCEFYMKTG TCKFGVYCKY 120 HHPRTGAGTM IPAALNYYGY PIRPGETECS YYMKTGQCKF GLACKFHHPN PAGVSMLAPA 180 PAPALAPAPT FYPMVQSPSV PSQPYGGVPT SWQVPRPTLL SGSYVQGAYA PMLLPPAMVP 240 VSGWSPYRAP LSPVASPGTQ PTVRAGPLYG VAQLSSSATE YVGPYRPLPC LAVSLSSSMK 300 ERMFPERPGE PECQYYMRTG DCKFGTSCKY HHPPDWAAPE TNSGLSTMGL PLRPGASPCT 360 FYMQHGICKF GPTCKFDHPM EMLSYRSSAP ALVDMPVSPY PVCSSLATPA PPSSSSEFQP 420 EFITGSHISY STRLPSSINS TGLVGSMFSK SGPVLPHLFF GRSPPVPSRV NIGGDVRSSN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-141 | C3H family protein |