PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_026456688.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
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Family | C3H | ||||||||
Protein Properties | Length: 481aa MW: 52303.6 Da PI: 8.5313 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.9 | 1.3e-11 | 54 | 78 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+C yGdrC+++H++ XP_026456688.1 54 EPNCVYYMRTGFCGYGDRCRYNHPR 78 689********************96 PP | |||||||
2 | zf-CCCH | 35.7 | 1.4e-11 | 99 | 124 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C f+++tGtCk+G Ck++H++ XP_026456688.1 99 GQPVCEFYMKTGTCKFGVYCKYHHPR 124 6799********************96 PP | |||||||
3 | zf-CCCH | 37.7 | 3.3e-12 | 145 | 169 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C+++++tG+Ck+G CkF+H+ XP_026456688.1 145 GETECSYYMKTGQCKFGLACKFHHP 169 7789********************8 PP | |||||||
4 | zf-CCCH | 38.5 | 1.9e-12 | 308 | 334 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G +Ck++H+p XP_026456688.1 308 PGEPECQYYMRTGDCKFGTSCKYHHPP 334 5799*********************97 PP | |||||||
5 | zf-CCCH | 35.5 | 1.7e-11 | 358 | 381 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C f+++ G+Ck+G++CkF H++ XP_026456688.1 358 SPCTFYMQHGICKFGPTCKFDHPM 381 69********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 481 aa Download sequence |
MERFGKNQLI MESDPQFGWN SSSIQLSQTS SLDVAMLQLR LGNQESSYPE RPAEPNCVYY 60 MRTGFCGYGD RCRYNHPRDR SSLVVGAVRQ GGEYPQREGQ PVCEFYMKTG TCKFGVYCKY 120 HHPRTGAGTM IPAALNYYGY PIRPGETECS YYMKTGQCKF GLACKFHHPN PAGVSMLAPA 180 PAPALAPAPT FYPMVQSPSV PSQPYGGVPT SWQVPRPTLL SGSYVQGAYA PMLLPPAMVP 240 VSGWSPYRAP LSPVASPGTQ PTVRAGPLYG VAQLSSSATE YVGPYRPLPC LAVSLSSSMK 300 ERMFPERPGE PECQYYMRTG DCKFGTSCKY HHPPDWAAPE TNSGLSTMGL PLRPQGASPC 360 TFYMQHGICK FGPTCKFDHP MEMLSYRSSA PALVDMPVSP YPVCSSLATP APPSSSSEFQ 420 PEFITGSHIS YSTRLPSSIN STGLVGSMFS KSGPVLPHLF FGRSPPVPSR VNIGGDVRSS 480 N |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-139 | C3H family protein |