PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026456688.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family C3H
Protein Properties Length: 481aa    MW: 52303.6 Da    PI: 8.5313
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026456688.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.91.3e-115478327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                    +++C +++rtG+C yGdrC+++H++
  XP_026456688.1 54 EPNCVYYMRTGFCGYGDRCRYNHPR 78
                    689********************96 PP

2zf-CCCH35.71.4e-1199124227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++ C f+++tGtCk+G  Ck++H++
  XP_026456688.1  99 GQPVCEFYMKTGTCKFGVYCKYHHPR 124
                     6799********************96 PP

3zf-CCCH37.73.3e-12145169226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++ +C+++++tG+Ck+G  CkF+H+
  XP_026456688.1 145 GETECSYYMKTGQCKFGLACKFHHP 169
                     7789********************8 PP

4zf-CCCH38.51.9e-12308334127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C++++rtG Ck+G +Ck++H+p
  XP_026456688.1 308 PGEPECQYYMRTGDCKFGTSCKYHHPP 334
                     5799*********************97 PP

5zf-CCCH35.51.7e-11358381427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     ++C f+++ G+Ck+G++CkF H++
  XP_026456688.1 358 SPCTFYMQHGICKFGPTCKFDHPM 381
                     69********************95 PP

Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    
MERFGKNQLI MESDPQFGWN SSSIQLSQTS SLDVAMLQLR LGNQESSYPE RPAEPNCVYY  60
MRTGFCGYGD RCRYNHPRDR SSLVVGAVRQ GGEYPQREGQ PVCEFYMKTG TCKFGVYCKY  120
HHPRTGAGTM IPAALNYYGY PIRPGETECS YYMKTGQCKF GLACKFHHPN PAGVSMLAPA  180
PAPALAPAPT FYPMVQSPSV PSQPYGGVPT SWQVPRPTLL SGSYVQGAYA PMLLPPAMVP  240
VSGWSPYRAP LSPVASPGTQ PTVRAGPLYG VAQLSSSATE YVGPYRPLPC LAVSLSSSMK  300
ERMFPERPGE PECQYYMRTG DCKFGTSCKY HHPPDWAAPE TNSGLSTMGL PLRPQGASPC  360
TFYMQHGICK FGPTCKFDHP MEMLSYRSSA PALVDMPVSP YPVCSSLATP APPSSSSEFQ  420
PEFITGSHIS YSTRLPSSIN STGLVGSMFS KSGPVLPHLF FGRSPPVPSR VNIGGDVRSS  480
N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.11e-139C3H family protein