PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026453994.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C2H2

Protein Properties

Length: 740aa MW: 83866.2 Da PI: 8.1269

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026453994.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00015	22	41	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C++Cgk sr+ L++H+ XP_026453994.1 22 FRCNYCGKEMSRRCRLQNHL 41 89*****************8 PP
2	zf-C2H2	12.6	0.00041	93	111	2	20
EETTTTEEESSHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHi 20 kC++Cgk ++ + Lk+H+ XP_026453994.1 93 KCNYCGKEVTTCYRLKNHL 111 7*****************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 740 aa Download sequence
MATPTVVIDD HCTVVDREKR RFRCNYCGKE MSRRCRLQNH LAGIREKVLP CDEVPAEVRA 60 QMKNEIVRRK KAVAYTSSND HCTLVDEKKK RVKCNYCGKE VTTCYRLKNH LAGIRENVLP 120 CDEVPEKVRA RMRNEIMRRK KADANTSSND PCKQNGSLHE SSQPSSKKRK HCTTIESGLK 180 EKDENTQSLI DPKQLNARDA GKIAKVAEDS SSRQIQRCIG RFFFENGIDF SAANSPYFQK 240 MIRALIGCGS VVYKVPSCDD LKGWILQEEL KASQEHVREI VDSWGTTGCS ILLDGWTDGK 300 GRDLINFVVD SPKGPIFMKS ADVSDIVGDV DAMIALLIGV IEEVGVQNVV QIVSYTTLGS 360 VDVAGKKLTE KYRTISWTVC ASHCIGLILD KIAMLDPWRG VLGKAKDIIK FICSHEIVLK 420 LTRKHTFGLD IVSSRRIGSL TPFLMLERIE SQKMNLKNMF SSLEWKKSTL ASTADGMQVV 480 DLVSGESSFW TEAQMLLKGS IPLIRALHLI SGGDSKPQMG YIYETMKQVK EQIKEEFKDN 540 ETKYQPFWTV IDAIWNNQLH KPIHSAAYIL NPSLFYCVDF NDDAEIKDGL SHCIEQMVED 600 KRARYLTLLQ LDDYMQTSGT FGDGNAIDQR MTISPEKWWS LYGVQCPELQ NFAIRILSQT 660 CTGALRYGLK RSLSEQLHMN GRNRVEQKRL NDLTFVHHNL RLQNAVSISK TDYRDIFLEE 720 TDHPVYEWVG GGDVKESVAE

Sequence ? help Back to Top

Protein Sequence Length: 740 aa Download sequence

MATPTVVIDD HCTVVDREKR RFRCNYCGKE MSRRCRLQNH LAGIREKVLP CDEVPAEVRA  60
QMKNEIVRRK KAVAYTSSND HCTLVDEKKK RVKCNYCGKE VTTCYRLKNH LAGIRENVLP  120
CDEVPEKVRA RMRNEIMRRK KADANTSSND PCKQNGSLHE SSQPSSKKRK HCTTIESGLK  180
EKDENTQSLI DPKQLNARDA GKIAKVAEDS SSRQIQRCIG RFFFENGIDF SAANSPYFQK  240
MIRALIGCGS VVYKVPSCDD LKGWILQEEL KASQEHVREI VDSWGTTGCS ILLDGWTDGK  300
GRDLINFVVD SPKGPIFMKS ADVSDIVGDV DAMIALLIGV IEEVGVQNVV QIVSYTTLGS  360
VDVAGKKLTE KYRTISWTVC ASHCIGLILD KIAMLDPWRG VLGKAKDIIK FICSHEIVLK  420
LTRKHTFGLD IVSSRRIGSL TPFLMLERIE SQKMNLKNMF SSLEWKKSTL ASTADGMQVV  480
DLVSGESSFW TEAQMLLKGS IPLIRALHLI SGGDSKPQMG YIYETMKQVK EQIKEEFKDN  540
ETKYQPFWTV IDAIWNNQLH KPIHSAAYIL NPSLFYCVDF NDDAEIKDGL SHCIEQMVED  600
KRARYLTLLQ LDDYMQTSGT FGDGNAIDQR MTISPEKWWS LYGVQCPELQ NFAIRILSQT  660
CTGALRYGLK RSLSEQLHMN GRNRVEQKRL NDLTFVHHNL RLQNAVSISK TDYRDIFLEE  720
TDHPVYEWVG GGDVKESVAE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	68	91	RRKKAVAYTSSNDHCTLVDEKKKR
2	69	92	RRKKAVAYTSSNDHCTLVDEKKKR
3	129	141	RARMRNEIMRRKK
4	138	170	RRKKADANTSSNDPCKQNGSLHESSQPSSKKRK