PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026453295.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

HRT-like

Protein Properties

Length: 471aa MW: 52885.2 Da PI: 9.5552

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026453295.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	55.9	7.1e-18	278	308	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv l+dGsvC+ +Pv+gRKRCeeHKG+Ri XP_026453295.1 278 ICGVSLGDGSVCRVKPVRGRKRCEEHKGRRI 308 8*****************************7 PP
2	HRT-like	53.5	4e-17	323	353	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGv+ledGs+C + Pv+gRKRCe HKGm+i XP_026453295.1 323 VCGVHLEDGSCCIEIPVQGRKRCELHKGMKI 353 7****************************97 PP
3	HRT-like	48.5	1.5e-15	381	409	1	29
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGm 29 iCGv+l+d svC++ Pv gRKRCe H Gm XP_026453295.1 381 ICGVLLSDASVCNARPVDGRKRCELHEGM 409 8***************************9 PP
4	HRT-like	36.4	8.6e-12	444	468	1	25
HRT-like 1 iCGviledGsvCkrqPvkgRKRCee 25 +CGv+l+dGs+C+ P+ gRKRCe XP_026453295.1 444 TCGVLLSDGSICNVRPIGGRKRCER 468 7**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence
MGIKEDPTRF VRLKREECKR TKHDSAFSEW KVLIGPSDWE NYLLRKEGVE RYRNHNLPLT 60 CSCPGLYELG VASTRSNSGR HVRKLDQNGI IVVYLGQADN IRSRLQDYVR AGSHLDRGKS 120 TNNLNADSNF VYQRGPGLFK EIFSKGFPIV FRWASLENKK EAEKTETQLL RVFDYAWNTG 180 GNGARRPNDI LLKLDKINSS TSPFPNVTRK LHQWLLVLEQ PFIRKKSGIR IKSVSPVKSD 240 GSNDQTSVDS HSRVFKFGRT QPRLVFDKCD MNEEDAVICG VSLGDGSVCR VKPVRGRKRC 300 EEHKGRRIIG CVPESVKENK SVVCGVHLED GSCCIEIPVQ GRKRCELHKG MKISTSRSVQ 360 DKGSTVSKSD TILESEEHSI ICGVLLSDAS VCNARPVDGR KRCELHEGMN LRTSINVHEK 420 GSPVSNSDPI SDRKSENEEK CIITCGVLLS DGSICNVRPI GGRKRCERTK S

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence

MGIKEDPTRF VRLKREECKR TKHDSAFSEW KVLIGPSDWE NYLLRKEGVE RYRNHNLPLT  60
CSCPGLYELG VASTRSNSGR HVRKLDQNGI IVVYLGQADN IRSRLQDYVR AGSHLDRGKS  120
TNNLNADSNF VYQRGPGLFK EIFSKGFPIV FRWASLENKK EAEKTETQLL RVFDYAWNTG  180
GNGARRPNDI LLKLDKINSS TSPFPNVTRK LHQWLLVLEQ PFIRKKSGIR IKSVSPVKSD  240
GSNDQTSVDS HSRVFKFGRT QPRLVFDKCD MNEEDAVICG VSLGDGSVCR VKPVRGRKRC  300
EEHKGRRIIG CVPESVKENK SVVCGVHLED GSCCIEIPVQ GRKRCELHKG MKISTSRSVQ  360
DKGSTVSKSD TILESEEHSI ICGVLLSDAS VCNARPVDGR KRCELHEGMN LRTSINVHEK  420
GSPVSNSDPI SDRKSENEEK CIITCGVLLS DGSICNVRPI GGRKRCERTK S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	4e-92	HRT-like family protein