PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026452894.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

bHLH

Protein Properties

Length: 431aa MW: 47601.2 Da PI: 6.9453

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026452894.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.3	5.5e-08	347	387	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P K++ a++L +A +Y+k L XP_026452894.1 347 ARQRRERISERIRVLQKLVPGG-----SKMDTASMLDEAANYLKFL 387 69****************95.....5**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence
MDILAGWDNL PRPVTNASNV QPRFWSSQQH DIGGNNSMVS SNNIVGGGNM MNNQGDGFFH 60 PNHPHHHELL QGMKTSASSL HSNRVVQQLA PELDSVNVVG LNSSNNLMMN KQQELSNVEL 120 CSSPMMNRPY NVISPYNGVF TATKVGSLME SLDCLMSVTK NTGTERITSV EDLWDFGSGS 180 SVVSSGESQN NKANEESKWQ VNELDETVSQ GSSNPNCVNI NGVISSNTNK SNSLKRKQGD 240 GVRDNGSYPL FDIKSDCFTT EAGFQLVTEN LQKSKRSRLE QSSNINFQHP DSSVSFTDEP 300 DTEAIAQMKE MIYRAAAFRP VNLGLEVVDK PRRKNVKISC DPQTVAARQR RERISERIRV 360 LQKLVPGGSK MDTASMLDEA ANYLKFLKSQ VKALETIGQK LQSTNPTTLS SPQFDINSVF 420 SMQALFQFPK P

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence

MDILAGWDNL PRPVTNASNV QPRFWSSQQH DIGGNNSMVS SNNIVGGGNM MNNQGDGFFH  60
PNHPHHHELL QGMKTSASSL HSNRVVQQLA PELDSVNVVG LNSSNNLMMN KQQELSNVEL  120
CSSPMMNRPY NVISPYNGVF TATKVGSLME SLDCLMSVTK NTGTERITSV EDLWDFGSGS  180
SVVSSGESQN NKANEESKWQ VNELDETVSQ GSSNPNCVNI NGVISSNTNK SNSLKRKQGD  240
GVRDNGSYPL FDIKSDCFTT EAGFQLVTEN LQKSKRSRLE QSSNINFQHP DSSVSFTDEP  300
DTEAIAQMKE MIYRAAAFRP VNLGLEVVDK PRRKNVKISC DPQTVAARQR RERISERIRV  360
LQKLVPGGSK MDTASMLDEA ANYLKFLKSQ VKALETIGQK LQSTNPTTLS SPQFDINSVF  420
SMQALFQFPK P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	329	335	DKPRRKN
2	330	335	KPRRKN
3	348	353	RQRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	6e-57	bHLH family protein