PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026452612.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family C3H
Protein Properties Length: 309aa    MW: 34835.1 Da    PI: 7.7356
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026452612.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.11.9e-1099123126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC  f + G+C+yGd+C++aHg
  XP_026452612.1  99 FKTRLCEKFKA-GHCSYGDNCSYAHG 123
                     79*********.*************9 PP
2zf-CCCH28.82.2e-09163187226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     k +lCr+f  + +C+yGd+C+F H 
  XP_026452612.1 163 KLRLCRRFISGQECPYGDKCNFLHR 187
                     779*******99************5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MSFPPSQFSP PFSTGNDAPM FWPQGSLVES EQQQSNFSEF PPFKKPRNFE ETPSMNSFQN  60
QGMGMNPFQN QGMMMNQRKM MMAPPQNPNQ NPRLGKIFFK TRLCEKFKAG HCSYGDNCSY  120
AHGVEDIREP PPNWQKIVAS REEDQSTLQT GVNWEDDQRL ISKLRLCRRF ISGQECPYGD  180
KCNFLHRPIG KCREELRFRE SSSISIGTTG SPGNVATLSR PDQPYGDKHQ FAADMHNYGG  240
GHNELLTGST ATDLAKFIPD DAPNSDAAVV SSNKRVVFAK KCLLNWDTKK LSGIYADWID  300
PRSPTNVES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.19e-38C3H family protein