PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026451611.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family C3H
Protein Properties Length: 435aa    MW: 47613.1 Da    PI: 8.3324
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026451611.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.94.5e-10106125525
                     --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                     +C+++++ G C+yG+rCkF H
  XP_026451611.1 106 ICKYWMA-GKCSYGERCKFLH 125
                     7******.************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    
MGIDNTKRIV NRSGGGVPTI DEVCRHWRAV RCTRNPCQYR HGELPQPNSN NGRQQPSNQR  60
NFSLSGSFPQ RKPNTYNRVP SKWGNQAGAV PKSTGFKAPL NTRDQICKYW MAGKCSYGER  120
CKFLHQWFVS DDFTMLAQLA GHEKEKVITG IAKPIGSNKL YSGGKDGTVR VWECLTGKCA  180
TVINLGSEVG CVISEDPWVF VGINNCVKAW NTQTNSELSL GGPSGQVYAL AVGNEKLFAG  240
TQDGTILVWK FVAATNGFEP AAALQGHSAS VVTLVVGANI LYSGSVDNTI RVWGLETLQC  300
IYTLTDHTSV VMSVLCWDQF LLSCSLDKTI KVWAVTETGK LEVTYTHEEE HGLFALSGMP  360
DAQGKPVLIC SCNDNTVCLY DLPSFKARGK IYAKEETRAI QTVPGGLYFT GDGSGDLKVW  420
KWTEQSRAAA ATMQQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-172C3H family protein