PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_026451298.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
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Family | C3H | ||||||||
Protein Properties | Length: 427aa MW: 46703.9 Da PI: 8.2966 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.4 | 5.6e-09 | 100 | 119 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++++ G C+yG+rCkF H XP_026451298.1 100 ICKYWMS-GKCSYGERCKFLH 119 7******.************* PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence |
MGIDNRRSGG GVPTIDEVCR HWRAGRCTRN PCQYRHSELP QPCSNNGRQQ PSDQRNFSLS 60 GSFPQRKPNT YNRVPSKWGS QGGAVNGRPK GTGFKAQDQI CKYWMSGKCS YGERCKFLHR 120 WFASDDFTML AQLAGHEKVI SGIALPKGSD KLYSGGKDGT VRVWDCQTGK CATVINLGSE 180 VGCVISEDPW VFVGINNCVK AWNTQTNSEL SLCGPSGQVY ALAVGNEKLF AATQDGTILV 240 WKFAAATNGF EPAAALQGHS ASVVTLVVGA NILYSGSMDN TIRVWGLETL QCIYTLRDHT 300 SVVMSVLCWD QFLLSCSLDK TIKVWAVTKT GKLEVTYTHE EEHGLLALSG MPDAQGKPVL 360 ICSCNDNTVR LYDLPSFKER GKIYAKEETR AIQTAPGGLF FTGDGNGDLK VWKWTEQSPA 420 AAATMQQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25440.1 | 1e-178 | C3H family protein |