PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_026450098.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
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Family | C3H | ||||||||
Protein Properties | Length: 488aa MW: 51461.7 Da PI: 7.5605 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.7 | 1.5e-11 | 63 | 88 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C +++rtG C yG rC+F+H++ XP_026450098.1 63 GEPNCVYYMRTGSCGYGIRCRFNHPR 88 5799********************96 PP | |||||||
2 | zf-CCCH | 43.1 | 7.2e-14 | 109 | 134 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C++f++tGtCk+G++CkF+H++ XP_026450098.1 109 GEPVCQYFMKTGTCKFGSSCKFNHPK 134 6799********************96 PP | |||||||
3 | zf-CCCH | 35.4 | 1.9e-11 | 155 | 180 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+ +tG+Ck+G++CkF+H++ XP_026450098.1 155 GEKECSFYIKTGQCKFGETCKFHHPQ 180 7899********************97 PP | |||||||
4 | zf-CCCH | 36.2 | 1e-11 | 313 | 337 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++Cr+++rtG CkyG+ C+++H+p XP_026450098.1 313 LPECRYYMRTGDCKYGSMCRYHHPP 337 689********************97 PP | |||||||
5 | zf-CCCH | 32.8 | 1.2e-10 | 358 | 382 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C ffa++G Ck+G++Ck+ H++ XP_026450098.1 358 APPCTFFAQYGVCKFGPTCKYDHPM 382 689********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 488 aa Download sequence |
MHSRIPGMEG TNTDPPSIDW NNNTGVGVIV SETGLEESMW QLGLGGGGSR NTTSGSSYPE 60 RLGEPNCVYY MRTGSCGYGI RCRFNHPRDR TLALGAVRQG EGDYPEREGE PVCQYFMKTG 120 TCKFGSSCKF NHPKFEGGTG NAVLLNYYGY PLRPGEKECS FYIKTGQCKF GETCKFHHPQ 180 PSSLTVPAPA PEFYQAVQSS LVPSTQQFGG VPASWQVGRP PLMPGSFVQG TYGSVLVSGG 240 MVPISGWSPY PGSVGQVASP SNQPTFGAGS PYGVTRLSPS APAYTGAPPP LPMSAAISSS 300 GEKETVYPDR PGLPECRYYM RTGDCKYGSM CRYHHPPELI APNTMVLSPM GLPLRPGAPP 360 CTFFAQYGVC KFGPTCKYDH PMGTLSYSPS ASSLTDMPVA PYPVGSSPTT LAPCSSSSEL 420 RPELITGSSK ESFITRVPSS ENASSGSVGS IFSKSSIVPH SSLPLAGQSS APSTGSSAGH 480 DGEIAGSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-144 | C3H family protein |