PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_026449419.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
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Family | C3H | ||||||||
Protein Properties | Length: 475aa MW: 51819 Da PI: 8.3143 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.9 | 1.3e-11 | 54 | 78 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG C yGdrC+++H++ XP_026449419.1 54 EPNCVYYMRTGSCGYGDRCRYNHPR 78 689********************96 PP | |||||||
2 | zf-CCCH | 35.8 | 1.4e-11 | 99 | 124 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C f+++tGtCk+G Ck++H++ XP_026449419.1 99 GQPVCEFYMKTGTCKFGVYCKYHHPR 124 6799********************96 PP | |||||||
3 | zf-CCCH | 37.8 | 3.3e-12 | 145 | 169 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C+++++tG+Ck+G CkF+H+ XP_026449419.1 145 GETECSYYMKTGQCKFGLACKFHHP 169 7789********************8 PP | |||||||
4 | zf-CCCH | 38.5 | 1.9e-12 | 303 | 329 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G +Ck++H+p XP_026449419.1 303 PGEPECQYYMRTGDCKFGTSCKYHHPP 329 5799*********************97 PP | |||||||
5 | zf-CCCH | 37.3 | 4.7e-12 | 351 | 375 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C f+++ G+Ck+G++CkF H++ XP_026449419.1 351 SPPCTFYMQHGICKFGPTCKFDHPM 375 589********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 475 aa Download sequence |
MERFGKNQLI MESDPQFGWN SSSIQLSQTS SLDVAMLQLR LGNQESSYPE RPAEPNCVYY 60 MRTGSCGYGD RCRYNHPRDR SSLVVGAVRQ GGEYPQREGQ PVCEFYMKTG TCKFGVYCKY 120 HHPRTGAGTM IPAALNYYGY PIRPGETECS YYMKTGQCKF GLACKFHHPN PAGVSMLAPA 180 PALAPAPTFY PMVQSPSVPS QPYGGVPTSW EVPRPTLLSG SYVQGAYAPM LLPPAMVPVS 240 GWSPYRAPLS PVASQPTVRA GPLYGVAQLP SSATEYVGPY RPLPSLAVSL SSSMKERMFP 300 ERPGEPECQY YMRTGDCKFG TSCKYHHPPD WTAPETNSVL STMGLPLRPE SPPCTFYMQH 360 GICKFGPTCK FDHPMEMLSY RSSAPALVDM PVSPYPVCSS LATPAPSSSS SEFQPEFITG 420 SHISYSTRLP SSINSTGLVG SMFSKSGPVL PHLFFGQSPP VPSRVNIGGD VRSSN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-134 | C3H family protein |