PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026449048.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family C3H
Protein Properties Length: 386aa    MW: 42678.5 Da    PI: 7.8978
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026449048.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.41.2e-08130151426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     + C++f++ G Ck+Gd+C +aHg
  XP_026449048.1 130 SACPDFRK-GNCKRGDTCEYAHG 151
                     67******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    
MMVHVPPWSL YDQDSVSGNN NNMMYQLPVS GVGSGCNSNN INNGGDYSPL CMSEAISALS  60
RYLPSNDLDS DDSDLSSVVD AYSCDEFRMY EFKVRRCSRG RSHDWTECPY AHPGEKARRR  120
DPRKFHYSGS ACPDFRKGNC KRGDTCEYAH GVFECWLHPA RYRTQPCKDG TSCRRRVCFF  180
AHTPEQLRIL PSQSQLSPRN ESSPPSYDGS PLRVALDSYY VGSSPTSTLN LSPPMSPNSG  240
SPPMSPSTGM GRSIIGSNSV NEMILNLRNL QLNKVKSAPS SWVLGSSSFC SPRASSSLRP  300
GFSSLPTTPT RTPTATRSGG VGYLDFWDQC SSLEEEPAME RVESGRNLRS KIYEKLSKEN  360
SFGRERVDSV PGSCGPDVQW VSELVK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-100C3H family protein