PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026448420.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family ARF
Protein Properties Length: 817aa    MW: 90164.3 Da    PI: 5.739
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026448420.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.81.2e-24163264199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   + ++
  XP_026448420.1 163 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGMVWKFRHIYRGQPRRHLLTTGWSAFVNNKKLVSGDAVLFL--RGED 254
                     99****************************963.3445679************************************************..4499 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+++v+r+
  XP_026448420.1 255 GELRLGVRRA 264
                     99*****997 PP
2Auxin_resp109.14.6e-36289370182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     +a+a+++k+ F++ Y Pr+s+seF ++++k++k    ++s+GmRfkm+feteds e+r++G+++g+s++dpvrWp+SkWr+L
  XP_026448420.1 289 VAKAVASKTLFHINYTPRVSPSEFLIPFQKFSKGSGLSLSIGMRFKMRFETEDSTEQRYTGMIAGISEMDPVRWPGSKWRCL 370
                     6899*****************************************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 817 aa     Download sequence    
MGGLIDLNNI LTEDEDDDTT TTTLLLSSSS PSSTTTPPPS VCLELWHACA GPHISLPKKN  60
TLVVYLPQGH LEHISQIPPS VVYDLPPHVF CRVVDVALRA ELTTDEVYAQ VSLIPDTEVE  120
QKLKGNQMEE NMVFIDEEEI EGAGGLSNNK SSSSSSTTTP HMFCKTLTAS DTSTHGGFSV  180
PRRAAEDCFP PLDYKQQRPS QELVAKDLHG MVWKFRHIYR GQPRRHLLTT GWSAFVNNKK  240
LVSGDAVLFL RGEDGELRLG VRRATQCKSG GSFSVFGSQT CNTSTLTSVA KAVASKTLFH  300
INYTPRVSPS EFLIPFQKFS KGSGLSLSIG MRFKMRFETE DSTEQRYTGM IAGISEMDPV  360
RWPGSKWRCL LVRWDDNMEM TRQNRVSPWE IEPSSSFSGS GNLSPPGAKR AKIRLPAQIA  420
DFPAPNGGRY LDFGESFRFQ KVLQGQEILG LNPSYDGYDV QNHQPFGIRR CDPGSNSNGM  480
AGILNGVKVL SGTSEIPNKG VGFGESDRFP KVLQGQELYS KAPQMRGLVD NRSHDSGEFG  540
YLDGVHRSTN GSAWPAMLRG YSDVQTRAPS VKVSSPSSVL MFQQASTRAA NPGHAYAFNN  600
NHEKEDSASM FAPELWKEHQ LMDFMHPPTS FVNRAGLMGE RGLATSRNGC RLFGFPLTEE  660
TQVANEEDIS TTPITSPSSN ENLNPDIPYV ACTENYLDPT SSAKAFGQRC TKILQVHKQG  720
SVAGRAIDLT KLEGYPDLIS ELERLFNMEG LLNDPKKGWQ VVYTDQEDEM MLIGDGPWKE  780
FCNIVSKILI YTRDQEVVEM DNNGNSSEGE VGIFGIP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0ARF family protein