PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026448134.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 386aa MW: 42086.8 Da PI: 7.8111

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026448134.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.3	9.1e-12	30	53	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++f++tGtC++G +Ck++H++ XP_026448134.1 30 PDCQYFLKTGTCRFGVTCKYNHPR 53 79********************96 PP
2	zf-CCCH	34.5	3.5e-11	74	98	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++++rtG CkyG CkF+H++ XP_026448134.1 74 EKPCPHYMRTGVCKYGFACKFNHPQ 98 689********************97 PP
3	zf-CCCH	39.6	9e-13	224	249	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++Ck++H++ XP_026448134.1 224 DQPECQYYMKTGTCKFGPTCKYHHPR 249 689*********************96 PP
4	zf-CCCH	32.1	2e-10	269	294	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C f++ +G+Ck+G +Ck+ H+ XP_026448134.1 269 PGQAICTFYSLYGICKFGLSCKYDHP 294 5789*********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MVLLLQIQIS IPIGQVAQYR GELPERDGLP DCQYFLKTGT CRFGVTCKYN HPRDKDDARK 60 IQLNMLGLPI RQEEKPCPHY MRTGVCKYGF ACKFNHPQPA AVGSLPPVTG NASFGSTGSS 120 VAPPLSGLPY VGGIPAWTLP TTPYLSGHPM QGPQAYMPVV LSSSQGIITA PQGWTYSETA 180 NPVSSTNVLG SNFIYTSKHQ GELGINGQVH MLQTPAPQFP ERPDQPECQY YMKTGTCKFG 240 PTCKYHHPRE RTAPLATSTL SPYGLPLRPG QAICTFYSLY GICKFGLSCK YDHPLTGLYN 300 YNLGMPALSI PDPTFSYNRI STLAGSEEKS PSKSSISLSD QNEETDTTSI KHQCMDAKTS 360 EEPKQQAVSS VNTSTTSLQL PLDASE

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MVLLLQIQIS IPIGQVAQYR GELPERDGLP DCQYFLKTGT CRFGVTCKYN HPRDKDDARK  60
IQLNMLGLPI RQEEKPCPHY MRTGVCKYGF ACKFNHPQPA AVGSLPPVTG NASFGSTGSS  120
VAPPLSGLPY VGGIPAWTLP TTPYLSGHPM QGPQAYMPVV LSSSQGIITA PQGWTYSETA  180
NPVSSTNVLG SNFIYTSKHQ GELGINGQVH MLQTPAPQFP ERPDQPECQY YMKTGTCKFG  240
PTCKYHHPRE RTAPLATSTL SPYGLPLRPG QAICTFYSLY GICKFGLSCK YDHPLTGLYN  300
YNLGMPALSI PDPTFSYNRI STLAGSEEKS PSKSSISLSD QNEETDTTSI KHQCMDAKTS  360
EEPKQQAVSS VNTSTTSLQL PLDASE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	3e-72	C3H family protein