PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_026448130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
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Family | C3H | ||||||||
Protein Properties | Length: 443aa MW: 48564.9 Da PI: 8.0077 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.8 | 1.2e-10 | 42 | 67 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C ++ rtG C yG++C+F+H+ XP_026448130.1 42 PGEPDCIYYIRTGLCGYGNNCRFNHP 67 5789*********************8 PP | |||||||
2 | zf-CCCH | 36.1 | 1.1e-11 | 87 | 110 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++f++tGtC++G +Ck++H++ XP_026448130.1 87 PDCQYFLKTGTCRFGVTCKYNHPR 110 79********************96 PP | |||||||
3 | zf-CCCH | 34.3 | 4.1e-11 | 131 | 155 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++++rtG CkyG CkF+H++ XP_026448130.1 131 EKPCPHYMRTGVCKYGFACKFNHPQ 155 689********************97 PP | |||||||
4 | zf-CCCH | 39.3 | 1.1e-12 | 281 | 306 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++Ck++H++ XP_026448130.1 281 DQPECQYYMKTGTCKFGPTCKYHHPR 306 689*********************96 PP | |||||||
5 | zf-CCCH | 31.9 | 2.3e-10 | 326 | 351 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C f++ +G+Ck+G +Ck+ H+ XP_026448130.1 326 PGQAICTFYSLYGICKFGLSCKYDHP 351 5789*********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence |
MPDSWKVKIN ASPDNLQAMW RLKIQAQNGV VVANSNLYPD RPGEPDCIYY IRTGLCGYGN 60 NCRFNHPSYP GQVAQYRGEL PERDGLPDCQ YFLKTGTCRF GVTCKYNHPR DKDDARKIQL 120 NMLGLPIRQE EKPCPHYMRT GVCKYGFACK FNHPQPAAVG SLPPVTGNAS FGSTGSSVAP 180 PLSGLPYVGG IPAWTLPTTP YLSGHPMQGP QAYMPVVLSS SQGIITAPQG WTYSETANPV 240 SSTNVLGSNF IYTSKHQGEL GINGQVHMLQ TPAPQFPERP DQPECQYYMK TGTCKFGPTC 300 KYHHPRERTA PLATSTLSPY GLPLRPGQAI CTFYSLYGIC KFGLSCKYDH PLTGLYNYNL 360 GMPALSIPDP TFSYNRISTL AGSEEKSPSK SSISLSDQNE ETDTTSIKHQ CMDAKTSEEP 420 KQQAVSSVNT STTSLQLPLD ASE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-92 | C3H family protein |