PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_026448129.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
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Family | C3H | ||||||||
Protein Properties | Length: 444aa MW: 48694 Da PI: 7.8819 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.8 | 1.2e-10 | 43 | 68 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C ++ rtG C yG++C+F+H+ XP_026448129.1 43 PGEPDCIYYIRTGLCGYGNNCRFNHP 68 5789*********************8 PP | |||||||
2 | zf-CCCH | 36.1 | 1.1e-11 | 88 | 111 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++f++tGtC++G +Ck++H++ XP_026448129.1 88 PDCQYFLKTGTCRFGVTCKYNHPR 111 79********************96 PP | |||||||
3 | zf-CCCH | 34.2 | 4.1e-11 | 132 | 156 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++++rtG CkyG CkF+H++ XP_026448129.1 132 EKPCPHYMRTGVCKYGFACKFNHPQ 156 689********************97 PP | |||||||
4 | zf-CCCH | 39.3 | 1.1e-12 | 282 | 307 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++Ck++H++ XP_026448129.1 282 DQPECQYYMKTGTCKFGPTCKYHHPR 307 689*********************96 PP | |||||||
5 | zf-CCCH | 31.9 | 2.3e-10 | 327 | 352 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C f++ +G+Ck+G +Ck+ H+ XP_026448129.1 327 PGQAICTFYSLYGICKFGLSCKYDHP 352 5789*********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence |
MPDSWKVKIN ASPDNLQEAM WRLKIQAQNG VVVANSNLYP DRPGEPDCIY YIRTGLCGYG 60 NNCRFNHPSY PGQVAQYRGE LPERDGLPDC QYFLKTGTCR FGVTCKYNHP RDKDDARKIQ 120 LNMLGLPIRQ EEKPCPHYMR TGVCKYGFAC KFNHPQPAAV GSLPPVTGNA SFGSTGSSVA 180 PPLSGLPYVG GIPAWTLPTT PYLSGHPMQG PQAYMPVVLS SSQGIITAPQ GWTYSETANP 240 VSSTNVLGSN FIYTSKHQGE LGINGQVHML QTPAPQFPER PDQPECQYYM KTGTCKFGPT 300 CKYHHPRERT APLATSTLSP YGLPLRPGQA ICTFYSLYGI CKFGLSCKYD HPLTGLYNYN 360 LGMPALSIPD PTFSYNRIST LAGSEEKSPS KSSISLSDQN EETDTTSIKH QCMDAKTSEE 420 PKQQAVSSVN TSTTSLQLPL DASE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 1e-93 | C3H family protein |