PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026445509.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family ARF
Protein Properties Length: 712aa    MW: 79848.3 Da    PI: 5.8919
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026445509.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.88.7e-23153254199
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f k+lt sd++++g +++ k++a+e+     ++++  s++l+ +d++g +W +++ yr++++r+++t+GW+++v++++L +gD++vF   + +++
  XP_026445509.1 153 FSKILTASDTSTHGGFSVLKRHADEClppldMSQQLPSQELVARDLHGAEWHFRHVYRGHPKRHLFTTGWSNYVSSKKLVTGDTFVFL--RGENG 245
                     889***************************9555666789************************************************..44999 PP

                     ..EEEEE-S CS
              B3  91 elvvkvfrk 99 
                     el+v+v+r+
  XP_026445509.1 246 ELRVGVRRA 254
                     9*****996 PP
2Auxin_resp113.42.1e-37279360182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     a+ha+st+++F+v+Y+Pr+s+seF ++++++++++k+k+s+G Rf+m+fe+e+++++r+ Gt+vg+ d+dp+rWp+SkWr+L
  XP_026445509.1 279 ASHAISTGTMFSVYYCPRMSPSEFLIPYNEYMSSVKNKYSIGLRFRMKFEGEECPKQRIVGTIVGIDDVDPIRWPRSKWRCL 360
                     789******************************************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    
MGLDGVKERL LNLEEMFPNL EEGPATTTTA YVHEGLSHTN NQYEKDELYT ELWHACAGPL  60
VNIPHVGDRV FYLPQGHLEQ VEAYTNQEFD LQLPKHNLPS QILCRVVYVQ LKAELETDEV  120
FAQVTLLPET KEEMSGIEEE TSRSSIGSHS RSFSKILTAS DTSTHGGFSV LKRHADECLP  180
PLDMSQQLPS QELVARDLHG AEWHFRHVYR GHPKRHLFTT GWSNYVSSKK LVTGDTFVFL  240
RGENGELRVG VRRAMETQQN ASSSVISCRS MQLGVLATAS HAISTGTMFS VYYCPRMSPS  300
EFLIPYNEYM SSVKNKYSIG LRFRMKFEGE ECPKQRIVGT IVGIDDVDPI RWPRSKWRCL  360
TVTWDEPCLT AVRPQRVSPW TIELSDNART NSLPVQLKMT RRVRTQHSSS ADSSILDDGS  420
SKNTFDQPPP QKRHSGVLQG QESAISAIEL GTIRQPPQAP SLIPNLEWGQ APKKFESGNH  480
LNIQFSPDLC CTIPISSLMP NDFGLNNCIP LSSTYDTRGS TGLSLSNWSV LNEKHNKPES  540
KEMNVVTKSN SDGKCMLFGV DLVKLPTESA SLHVISPPEF VNSEQHSGPS KMMKRCDSSN  600
SDGDSEKLLQ NCPVTTRSCT KVLKYGTALG RSVDLMKLGG YDELIDELDR MFDFNGALIE  660
RSNGWNVIYV DDEGDTMQIG DYPWQEFQLM ARKLLICPKE DMDCSLNPLP IP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.41e-171ARF family protein