PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026444542.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

MYB

Protein Properties

Length: 542aa MW: 60361.3 Da PI: 6.2639

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026444542.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.9	2.4e-18	65	111	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av+ + g++Wk+Ia+ ++ +Rt+ qc +rwqk+l XP_026444542.1 65 KGGWTPEEDEKLRKAVESFKGKNWKRIAASLP-HRTEVQCLHRWQKVL 111 688***************************.**********986 PP
2	Myb_DNA-binding	58.6	1.4e-18	117	163	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd+++ ++v ++G+ W++Ia++++ gR +kqc++rw+++l XP_026444542.1 117 KGPWTLEEDDKIMELVSKYGPSKWSLIAKELP-GRIGKQCRERWHNHL 163 79****************************.***********97 PP
3	Myb_DNA-binding	45.7	1.5e-14	169	212	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r++WT eE+ l +a++++G++ W+ Ia+ ++ gRt++ +k+ w++ XP_026444542.1 169 RDAWTVEEEVALMNAHRLYGNK-WAEIAKVLP-GRTDNAIKNLWNS 212 789*****************.*****.*******9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence
MDDDAEMMVD VDVEVRCLEN KQETPNSSSS VSDEEEEDLN CTSSSLSVRS ASSNRRISGP 60 IRRAKGGWTP EEDEKLRKAV ESFKGKNWKR IAASLPHRTE VQCLHRWQKV LHPDLVKGPW 120 TLEEDDKIME LVSKYGPSKW SLIAKELPGR IGKQCRERWH NHLNPEIKRD AWTVEEEVAL 180 MNAHRLYGNK WAEIAKVLPG RTDNAIKNLW NSSLKKKLDF YLSSGQLPPL GPVLKTEDYA 240 LAMSRSPDAG NSIVYLDEGF NTGTQCSLEK DDSHKFGEGT MVLVQPSTPE FLDREVPTGV 300 LAIESSNSDD IEGKQLASEN YYSCSKSFST PNSVQYRSNA VADPEKNIAA TTLQMAVPVP 360 SPSLFEMSDS NSVLSPSSFL TPPRIRNNGL DLHSAESILK NAAKSFQNTP SILRKRKREA 420 GGTPNRNVQA NGLTDEDKLH SLETETMESC KETPGSLESN SSTGRVNSTI KLFYTRKKHH 480 PYRSRVERPD ACKSLEKQLD STLDGVSIGD SQYESMKSAS DHQGKSTNKE DGRDPLQNSV 540 AS

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence

MDDDAEMMVD VDVEVRCLEN KQETPNSSSS VSDEEEEDLN CTSSSLSVRS ASSNRRISGP  60
IRRAKGGWTP EEDEKLRKAV ESFKGKNWKR IAASLPHRTE VQCLHRWQKV LHPDLVKGPW  120
TLEEDDKIME LVSKYGPSKW SLIAKELPGR IGKQCRERWH NHLNPEIKRD AWTVEEEVAL  180
MNAHRLYGNK WAEIAKVLPG RTDNAIKNLW NSSLKKKLDF YLSSGQLPPL GPVLKTEDYA  240
LAMSRSPDAG NSIVYLDEGF NTGTQCSLEK DDSHKFGEGT MVLVQPSTPE FLDREVPTGV  300
LAIESSNSDD IEGKQLASEN YYSCSKSFST PNSVQYRSNA VADPEKNIAA TTLQMAVPVP  360
SPSLFEMSDS NSVLSPSSFL TPPRIRNNGL DLHSAESILK NAAKSFQNTP SILRKRKREA  420
GGTPNRNVQA NGLTDEDKLH SLETETMESC KETPGSLESN SSTGRVNSTI KLFYTRKKHH  480
PYRSRVERPD ACKSLEKQLD STLDGVSIGD SQYESMKSAS DHQGKSTNKE DGRDPLQNSV  540
AS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09370.1	1e-104	MYB family protein