PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_026442210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
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Family | C3H | ||||||||
Protein Properties | Length: 184aa MW: 20915.2 Da PI: 9.3188 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.2 | 1e-11 | 132 | 157 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y+ +C+++ +tG+C +Gd+CkF H+ XP_026442210.1 132 YRPDICKDYKQTGYCGFGDSCKFVHD 157 77899********************5 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence |
MADSEPSKEP VSSFFRKPSK NKNIRKQKNE GEKEEKEEDF KGSSVIIQKP KSAPKADIKL 60 HFSTGTLTKQ LAETNQEAAE SRRFYFDSSK EIQVQHDSRA TAAYTVSGEK AGGAHGPLRA 120 STHIRTSTRW DYRPDICKDY KQTGYCGFGD SCKFVHDGGD YKSGWQTERE WEEAEKIRKR 180 NLAL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01350.1 | 3e-54 | C3H family protein |