PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026441247.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

MYB

Protein Properties

Length: 414aa MW: 47746 Da PI: 9.2813

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026441247.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.4	4.3e-15	62	109	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd+ll +++ ++G g W+ ++ + g++R++k+c++rw++yl XP_026441247.1 62 KGAWAEEEDLLLRKCIIKYGEGKWRQVPIRAGLNRCRKSCRLRWLNYL 109 799*******************************************97 PP
2	Myb_DNA-binding	44.1	4.8e-14	115	160	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg + ++E +l+++ +k+lG++ W++Ia +++ gRt++++k++++++l XP_026441247.1 115 RGEFQPDEVDLIIRMHKLLGNR-WSLIAGRLP-GRTANDIKNYYNTHL 160 79999***************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence
MFVFLFEFTV RTSCYLDAIN TSSYKRSCTI MIIIIPNLHL LHHFSTMEES SSIVSSVKGL 60 RKGAWAEEED LLLRKCIIKY GEGKWRQVPI RAGLNRCRKS CRLRWLNYLQ PNIKRGEFQP 120 DEVDLIIRMH KLLGNRWSLI AGRLPGRTAN DIKNYYNTHL KKTCLSKSND NIEKGKQVVT 180 TNKSGHDSNS RRDDGQDHGN QKVLKRRRSC SNINTTDHID DKHMVTRVLK PQARTFKKSQ 240 WNANKLPTPT GMNNNQITTT TTRFPSYSQV VNKDITKCLP LLVDDQVSNG QQIRDNSTHW 300 VKNILFGETD EEEEENPMPK KKKLKKKKKR VTCNHNASKF ESNTTKGVEE GMTTKDKNDG 360 SNDDQHAYYC SPGDGNGWLE EGGSAGDTNN FWDSYLDENL WPMLEEEQEQ YLMM

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence

MFVFLFEFTV RTSCYLDAIN TSSYKRSCTI MIIIIPNLHL LHHFSTMEES SSIVSSVKGL  60
RKGAWAEEED LLLRKCIIKY GEGKWRQVPI RAGLNRCRKS CRLRWLNYLQ PNIKRGEFQP  120
DEVDLIIRMH KLLGNRWSLI AGRLPGRTAN DIKNYYNTHL KKTCLSKSND NIEKGKQVVT  180
TNKSGHDSNS RRDDGQDHGN QKVLKRRRSC SNINTTDHID DKHMVTRVLK PQARTFKKSQ  240
WNANKLPTPT GMNNNQITTT TTRFPSYSQV VNKDITKCLP LLVDDQVSNG QQIRDNSTHW  300
VKNILFGETD EEEEENPMPK KKKLKKKKKR VTCNHNASKF ESNTTKGVEE GMTTKDKNDG  360
SNDDQHAYYC SPGDGNGWLE EGGSAGDTNN FWDSYLDENL WPMLEEEQEQ YLMM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	320	330	KKKKLKKKKKR
2	322	330	KKLKKKKKR
3	327	357	KKKRVTCNHNASKFESNTTKGVEEGMTTKDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	2e-59	MYB family protein