PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026438491.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 681aa MW: 77548.7 Da PI: 9.9344

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026438491.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.4	9.1e-07	451	472	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 + lC+++ + G C+yG +Ck+ H XP_026438491.1 451 RQLCQYYPQ-GRCRYGKNCKYLH 472 78*****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 681 aa Download sequence
MEKINQKLPL SDEEYDDEEG VEEGESSGSE EIAADDDSEE DPTFDVLEET RSSLSRLSLK 60 KTKSRISKVI ESGNDEEEEP DDVEIKVPEL NAKDAKSYET IEKIIAGGQV EKLKVEQCKV 120 YLRKNGLRLT GKKDVLIDRI KEHLGIINGG GELKYPASSF VYNCKGDACT GDVVMFEQNV 180 YEMYNIASRS ATGPPCGTRT VVGRIVKESY GSAKQQHTFT IEVLWSKGVK LLPPLHPLLI 240 KGRNLYKLKT MRQLWADEEM RRKVLLEKHS RGSLARSNRE TRIQQKEMRK KSTGQRVLRN 300 ERNNVQETER RMSTDELETK PAAQLQNEHP TIYTKQPTQT GLHKPAFPLK MVLSEVCMNT 360 TMPSSITEQH HNNGYQVAKH RQNHISEKVK QSQFASRTQQ KFSGNVHDAY ANNAQNNFPE 420 FFYQSHHANA NQSSFNAPPR NSILGRAPSQ RQLCQYYPQG RCRYGKNCKY LHEDRDKHVN 480 GVTAKPSYPN ENASSFNAPP RSPTRRSCNS SLQSPTRRSY HSPVQSPIRR SFNAPAQNSF 540 NCPPRIPTHR SFNSPVWSPI ARSFNALSRG SLNCPPWSPS RGRQLHAQNS FNYPPRSPNH 600 RSFNSPARSP TPPRSPDYRS FNSPVRSPTR RSLNSPSRGS FNCPPWSPNR GGPPTQRQVC 660 RYYTQGRCYH GENCKYLHER R

Sequence ? help Back to Top

Protein Sequence Length: 681 aa Download sequence

MEKINQKLPL SDEEYDDEEG VEEGESSGSE EIAADDDSEE DPTFDVLEET RSSLSRLSLK  60
KTKSRISKVI ESGNDEEEEP DDVEIKVPEL NAKDAKSYET IEKIIAGGQV EKLKVEQCKV  120
YLRKNGLRLT GKKDVLIDRI KEHLGIINGG GELKYPASSF VYNCKGDACT GDVVMFEQNV  180
YEMYNIASRS ATGPPCGTRT VVGRIVKESY GSAKQQHTFT IEVLWSKGVK LLPPLHPLLI  240
KGRNLYKLKT MRQLWADEEM RRKVLLEKHS RGSLARSNRE TRIQQKEMRK KSTGQRVLRN  300
ERNNVQETER RMSTDELETK PAAQLQNEHP TIYTKQPTQT GLHKPAFPLK MVLSEVCMNT  360
TMPSSITEQH HNNGYQVAKH RQNHISEKVK QSQFASRTQQ KFSGNVHDAY ANNAQNNFPE  420
FFYQSHHANA NQSSFNAPPR NSILGRAPSQ RQLCQYYPQG RCRYGKNCKY LHEDRDKHVN  480
GVTAKPSYPN ENASSFNAPP RSPTRRSCNS SLQSPTRRSY HSPVQSPIRR SFNAPAQNSF  540
NCPPRIPTHR SFNSPVWSPI ARSFNALSRG SLNCPPWSPS RGRQLHAQNS FNYPPRSPNH  600
RSFNSPARSP TPPRSPDYRS FNSPVRSPTR RSLNSPSRGS FNCPPWSPNR GGPPTQRQVC  660
RYYTQGRCYH GENCKYLHER R