PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_026436009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
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Family | LSD | ||||||||
Protein Properties | Length: 108aa MW: 11846.7 Da PI: 7.6823 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 33.2 | 8.3e-11 | 22 | 46 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg Crtl YPrGAp+VRC +C t+ XP_026436009.1 22 CGTCRTLVFYPRGAPRVRCVSCKTI 46 **********************997 PP | |||||||
2 | zf-LSD1 | 42 | 1.5e-13 | 60 | 84 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C +C +lL+YP+GAp V+C++C+ + XP_026436009.1 60 CANCEVLLMYPYGAPKVKCSCCHSI 84 9*********************975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 108 aa Download sequence |
MGTHGTEWQS VSPLPELGQM VCGTCRTLVF YPRGAPRVRC VSCKTINLVL EDHQIGNVNC 60 ANCEVLLMYP YGAPKVKCSC CHSITDVGEH NQRPRLSDQQ GPPPHAVI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 1e-39 | LSD family protein |