PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026436009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family LSD
Protein Properties Length: 108aa    MW: 11846.7 Da    PI: 7.6823
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026436009.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD133.28.3e-112246125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    Cg Crtl  YPrGAp+VRC +C t+
  XP_026436009.1 22 CGTCRTLVFYPRGAPRVRCVSCKTI 46
                    **********************997 PP

2zf-LSD1421.5e-136084125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    C +C +lL+YP+GAp V+C++C+ +
  XP_026436009.1 60 CANCEVLLMYPYGAPKVKCSCCHSI 84
                    9*********************975 PP

Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    
MGTHGTEWQS VSPLPELGQM VCGTCRTLVF YPRGAPRVRC VSCKTINLVL EDHQIGNVNC  60
ANCEVLLMYP YGAPKVKCSC CHSITDVGEH NQRPRLSDQQ GPPPHAVI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.11e-39LSD family protein