PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026433898.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

FAR1

Protein Properties

Length: 667aa MW: 76499.5 Da PI: 7.8385

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026433898.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	26.2	2.7e-08	118	197	16	90
FAR1 16 kskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +s+sk++ +g+ + t+ C ++g +++kkk e ++r++ + ++gC +lk + +kw + + HnHel+ XP_026433898.1 118 ISHSKRT-LKGKGSRITLGCERSGWYTDHKKKslkpkpPEPRKRKSRTRKCGCPFQLKCDWVEGNKWTLRVVCGRHNHELS 197 4444444.67778999******99999999899998888889999999******999**************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 667 aa Download sequence
MVDVNFGREI MEVDSSSEGS FGSGRHLEST ATQMVDGTIN SSPRMEITPS VGSPQLDVDP 60 GVDSPQLVEM TSITEPDSQS IAVDLTPFFV TNQVFDSREA IIEWCQEVGK KNNTVLVISH 120 SKRTLKGKGS RITLGCERSG WYTDHKKKSL KPKPPEPRKR KSRTRKCGCP FQLKCDWVEG 180 NKWTLRVVCG RHNHELSDTL TGHAYAGRLK EEEKQLVLHL TATGVPPQQV LIALKEKSKE 240 NYSTLKTIYN VKAKHRKSQV EGKSAMQQVM ELLAQYHYVE KHRSNEETNE VRDIFWVHPE 300 SMLLAKCFPS VLMIDSTCKT NRFKKPLIHI VGISSTGKLF TVAFAFMEAG TEQHYIWALT 360 QLKWMYMPNT LPSLFVTDRE SALVNAIDIV FPRSSRLLST WHLNQQVQAN CEKAFEDIEE 420 WEQFLTDWNH VWQAETMDEC GDAYADFATK WAPKYPSCII YLRDTWLIQK EKFALAWTNK 480 IKHFGNTTTK ADKEHENLRK YLVSAVDSYN TCWKAMHNMI KDEIAQIKFS FELSLTTLNQ 540 EHLSPALEEL RNHVSHKALE LVLFEIHCSE NLGNEESSCR CFLHSIHGLP CAHELVKYVP 600 QGKAIPLSNI DSHWKQLSIV PTQELYNGFD VLPEFQLLKQ KWIQAVEPRR SLLLRKIKDI 660 ATFKTRN

Sequence ? help Back to Top

Protein Sequence Length: 667 aa Download sequence

MVDVNFGREI MEVDSSSEGS FGSGRHLEST ATQMVDGTIN SSPRMEITPS VGSPQLDVDP  60
GVDSPQLVEM TSITEPDSQS IAVDLTPFFV TNQVFDSREA IIEWCQEVGK KNNTVLVISH  120
SKRTLKGKGS RITLGCERSG WYTDHKKKSL KPKPPEPRKR KSRTRKCGCP FQLKCDWVEG  180
NKWTLRVVCG RHNHELSDTL TGHAYAGRLK EEEKQLVLHL TATGVPPQQV LIALKEKSKE  240
NYSTLKTIYN VKAKHRKSQV EGKSAMQQVM ELLAQYHYVE KHRSNEETNE VRDIFWVHPE  300
SMLLAKCFPS VLMIDSTCKT NRFKKPLIHI VGISSTGKLF TVAFAFMEAG TEQHYIWALT  360
QLKWMYMPNT LPSLFVTDRE SALVNAIDIV FPRSSRLLST WHLNQQVQAN CEKAFEDIEE  420
WEQFLTDWNH VWQAETMDEC GDAYADFATK WAPKYPSCII YLRDTWLIQK EKFALAWTNK  480
IKHFGNTTTK ADKEHENLRK YLVSAVDSYN TCWKAMHNMI KDEIAQIKFS FELSLTTLNQ  540
EHLSPALEEL RNHVSHKALE LVLFEIHCSE NLGNEESSCR CFLHSIHGLP CAHELVKYVP  600
QGKAIPLSNI DSHWKQLSIV PTQELYNGFD VLPEFQLLKQ KWIQAVEPRR SLLLRKIKDI  660
ATFKTRN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	146	161	KKKSLKPKPPEPRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-16	FAR1 family protein