PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026433663.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

AP2

Protein Properties

Length: 411aa MW: 46483.7 Da PI: 8.7096

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026433663.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	46.3	1.1e-14	76	135	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g XP_026433663.1 76 SRFRGVSRHRWTGRFEAHLWDkGSWNVtqkKKgKQVYLGAYDDEECAARAYDLAALKYWG 135 789****************888855555447***********************98 PP
2	AP2	50.6	4.7e-16	178	229	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g XP_026433663.1 178 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAAHAYDIAAIEYRG 229 89**99******99966...3.6***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MEMTPVKCEV NTGVRRRLCT ENNETRVVKN VKRRRREPIV GDTSTSTNTE SKEQQQVDGS 60 SATSTTTTTT TIKRSSRFRG VSRHRWTGRF EAHLWDKGSW NVTQKKKGKQ VYLGAYDDEE 120 CAARAYDLAA LKYWGPTTFT NFPVTDYEKE IQIMQNVTKE EYLASLRRKS SGFSRGVSKY 180 RGVARHHHNG RWEARIGRVF GNKYLYLGTY STQEEAAHAY DIAAIEYRGI NAVTNFDLST 240 YIRWLRPGTN ALVPSQEQQS NSEPQTFPKS SMLIPSNSLT VDESGSPRNQ EALGKEISVS 300 SCSNRSSSSP TALSLLLRSS VFRELVERNS YATNDEIDAE VARHQARVAG EDEFNRILCR 360 RITDLPYCPP SEDMPSIELQ LQEESESASP VYNQSGQSLW NGMLTMPPSL H

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MEMTPVKCEV NTGVRRRLCT ENNETRVVKN VKRRRREPIV GDTSTSTNTE SKEQQQVDGS  60
SATSTTTTTT TIKRSSRFRG VSRHRWTGRF EAHLWDKGSW NVTQKKKGKQ VYLGAYDDEE  120
CAARAYDLAA LKYWGPTTFT NFPVTDYEKE IQIMQNVTKE EYLASLRRKS SGFSRGVSKY  180
RGVARHHHNG RWEARIGRVF GNKYLYLGTY STQEEAAHAY DIAAIEYRGI NAVTNFDLST  240
YIRWLRPGTN ALVPSQEQQS NSEPQTFPKS SMLIPSNSLT VDESGSPRNQ EALGKEISVS  300
SCSNRSSSSP TALSLLLRSS VFRELVERNS YATNDEIDAE VARHQARVAG EDEFNRILCR  360
RITDLPYCPP SEDMPSIELQ LQEESESASP VYNQSGQSLW NGMLTMPPSL H

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	15	36	RRRLCTENNETRVVKNVKRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	5e-93	AP2 family protein