PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026430681.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 684aa MW: 77810.2 Da PI: 10.1413

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026430681.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.7	3.1e-06	454	475	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 + C+++ + G C+yG +Ck+ H XP_026430681.1 454 RQVCQYYPQ-GRCRYGKNCKYLH 475 678****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence
MEKINQKMFP VSDDENYCEE EEEGESLGRE EIAAADDSEE DPTFDVLEET RSSLSRLSLK 60 KSKSRISKVI ESGNDDEEPD DVEIKVPELN AKDAKSYETI EKIIAGGQVE KLKVEQCKVY 120 LRKNGLRLTG KKDVLIDRIK EHLGIINGGG ELKYPASSFV FNCKGDACTG DVVMFEQNVY 180 EMYNIASRSA IGPPCGTRTV AGRIVKESYG SAKQQHTFTI EVLWSKGVKP LPPLHPLLIK 240 GRNLYKLKTM RQLWVDEEMR RKVLLEKHSR GSLARSNRET RIQQKEMRKK CIGQRVLRNE 300 INSKRNSVQE TKRRMSPDEL EMEPAGQLQN EHPTIYTKQS TQTGQHKPAF PPKMVLSEVC 360 MNTTMPSSIT EQHHNNGYQV AKHRQNHISE KVNQSQFASS TQQKFSGNVH DAYANSAQNN 420 FSEKLHQSHH ANANQSSFNA PPRNSILGRA PSQRQVCQYY PQGRCRYGKN CKYLHEDRDK 480 RVNGVTAKPS YPNENASSFN APPRSPTRRS CNSSLQSPSR RSYHSPVRSP IRRSFNAPAQ 540 NSFNCPPRSP THRSFNSPVR SPIARSFNAL ARGSLNCPPW SPSRGRQLHA QNSFNYPPRS 600 PNHRSFNSPA RSPTPPRSPN YRSFNSPVRS PTHRNFNSPS RASFNCPPWS PNRGGPPMQR 660 QVCRYYNQGR CYHGENCKYL HERR

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence

MEKINQKMFP VSDDENYCEE EEEGESLGRE EIAAADDSEE DPTFDVLEET RSSLSRLSLK  60
KSKSRISKVI ESGNDDEEPD DVEIKVPELN AKDAKSYETI EKIIAGGQVE KLKVEQCKVY  120
LRKNGLRLTG KKDVLIDRIK EHLGIINGGG ELKYPASSFV FNCKGDACTG DVVMFEQNVY  180
EMYNIASRSA IGPPCGTRTV AGRIVKESYG SAKQQHTFTI EVLWSKGVKP LPPLHPLLIK  240
GRNLYKLKTM RQLWVDEEMR RKVLLEKHSR GSLARSNRET RIQQKEMRKK CIGQRVLRNE  300
INSKRNSVQE TKRRMSPDEL EMEPAGQLQN EHPTIYTKQS TQTGQHKPAF PPKMVLSEVC  360
MNTTMPSSIT EQHHNNGYQV AKHRQNHISE KVNQSQFASS TQQKFSGNVH DAYANSAQNN  420
FSEKLHQSHH ANANQSSFNA PPRNSILGRA PSQRQVCQYY PQGRCRYGKN CKYLHEDRDK  480
RVNGVTAKPS YPNENASSFN APPRSPTRRS CNSSLQSPSR RSYHSPVRSP IRRSFNAPAQ  540
NSFNCPPRSP THRSFNSPVR SPIARSFNAL ARGSLNCPPW SPSRGRQLHA QNSFNYPPRS  600
PNHRSFNSPA RSPTPPRSPN YRSFNSPVRS PTHRNFNSPS RASFNCPPWS PNRGGPPMQR  660
QVCRYYNQGR CYHGENCKYL HERR