PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_026427924.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 381aa MW: 43108.7 Da PI: 6.8452 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.3 | 2.3e-07 | 134 | 154 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f+r G C +Gd+C F+Hg XP_026427924.1 134 ACSDFRR-GNCLRGDSCEFSHG 154 6******.*************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 381 aa Download sequence |
MSSSMCAAEK DHYKKLLVHH QGGVADLPPR KQLLTRRSSN LMIPSISFDD HDDDHIESVL 60 LNFPLKFLPC NNTSEDDDDD ENDPYASDEF RIYEFKIRRC MRSRSHDWTD CPFAHPGEKA 120 RRRDPRRYHY SGNACSDFRR GNCLRGDSCE FSHGVFECWL HPTRYRTQVC KDGRNCKRKV 180 CFFAHTPKQL RVFVPPHDSP RTKPHHHLCN CVYSHSSSSS PVSSSSPTST LMGFSHLSLS 240 PPLSPTISPS SSSELTPKQQ QSLLGMLSYK SKLMELVNSL EAMDLSCINN DSPTSAAMIN 300 DNNFSWSGGG NNNISSSSPN YENQEQFFMS PNSTTTQSPG NNSGFKRRDY YNFSSNEDYG 360 YGESSSSTCP PDLDWVNELV M |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G25900.2 | 4e-64 | C3H family protein |