PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026427005.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 777aa MW: 85655.2 Da PI: 5.6797

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026427005.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.5	7.2e-06	472	492	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f+++ G+C+ d+CkF+H+ XP_026427005.1 472 YCEFYLK-GICQKRDSCKFSHD 492 5****.***********7 PP
2	zf-CCCH	19	2.6e-06	526	546	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+++a +G C +Gd+C F+H XP_026427005.1 526 PCSNYATSGSCFRGDKCLFSH 546 7******************** PP

Sequence ? help Back to Top
Protein Sequence Length: 777 aa Download sequence
MRNQTLITSM GEVIFHSRFR HRRSHLKSKT VDTLLKIISL CADDDQEESQ ISSPIVSDAL 60 NSGVRRNDSE NELVKDKNVE VLLGECEKLS IVNDLSVDDY SIENENLLTE NVNWAMASNL 120 LSDENVEPLG VEDSRILDGV ASSVVKNCSD NNIEEPQQGN VDEIKVVDEH VTDEIREPIR 180 ITEDMQMQSS SSEQNVVNGV GGESQWGEMG LTEPVNLDSS IRCLTDMDIE DDEIPDGLGL 240 YNEFVSLIHE GLAQNEEKSG GEDHIYYEVI KEREVENEHQ DDTGAEENHM SSTCIQGEIQ 300 LKTNGGKLDR NLKRGYGDDL LQGAGDSGKE NDEANVDAIT KRVCLSDRNL KRGYGDDWLQ 360 EVGDSGRENS KSKAAAATEE VGLCNRKLER GYEGDWLRDS RTSGKGNGGA KATETTKKNT 420 KVGEKRPIIL SKEIKAKKKM NERKKRAQTR KEQGVKRLRI EPPISKPKVP KYCEFYLKGI 480 CQKRDSCKFS HDTTPLTKSQ PCKFLALQQC LKGDDCPFDH QLAKYPCSNY ATSGSCFRGD 540 KCLFSHKIGK TSKPYDVSPT EAVSQPLPNN LNSKSSLNTK NISPCTLNII SSGASLKTPS 600 STGNQFLKNP EQSVLGKLRP PAQPPKGVTL LSFSKTPPNN SSNKADSNST EASTRKDQES 660 LKPPPSLDEL FQKNTTSTPS SASQYSQNPL QNVQNKNSAK RAPSSTLNFA AKYESEMKKN 720 RSKTPTGLST TNTTTDSSKT PTSTASSSID NIQNRLLKAS PLLQEFLFGF GGTDGKL

Sequence ? help Back to Top

Protein Sequence Length: 777 aa Download sequence

MRNQTLITSM GEVIFHSRFR HRRSHLKSKT VDTLLKIISL CADDDQEESQ ISSPIVSDAL  60
NSGVRRNDSE NELVKDKNVE VLLGECEKLS IVNDLSVDDY SIENENLLTE NVNWAMASNL  120
LSDENVEPLG VEDSRILDGV ASSVVKNCSD NNIEEPQQGN VDEIKVVDEH VTDEIREPIR  180
ITEDMQMQSS SSEQNVVNGV GGESQWGEMG LTEPVNLDSS IRCLTDMDIE DDEIPDGLGL  240
YNEFVSLIHE GLAQNEEKSG GEDHIYYEVI KEREVENEHQ DDTGAEENHM SSTCIQGEIQ  300
LKTNGGKLDR NLKRGYGDDL LQGAGDSGKE NDEANVDAIT KRVCLSDRNL KRGYGDDWLQ  360
EVGDSGRENS KSKAAAATEE VGLCNRKLER GYEGDWLRDS RTSGKGNGGA KATETTKKNT  420
KVGEKRPIIL SKEIKAKKKM NERKKRAQTR KEQGVKRLRI EPPISKPKVP KYCEFYLKGI  480
CQKRDSCKFS HDTTPLTKSQ PCKFLALQQC LKGDDCPFDH QLAKYPCSNY ATSGSCFRGD  540
KCLFSHKIGK TSKPYDVSPT EAVSQPLPNN LNSKSSLNTK NISPCTLNII SSGASLKTPS  600
STGNQFLKNP EQSVLGKLRP PAQPPKGVTL LSFSKTPPNN SSNKADSNST EASTRKDQES  660
LKPPPSLDEL FQKNTTSTPS SASQYSQNPL QNVQNKNSAK RAPSSTLNFA AKYESEMKKN  720
RSKTPTGLST TNTTTDSSKT PTSTASSSID NIQNRLLKAS PLLQEFLFGF GGTDGKL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	718	724	KKNRSKT