PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026427001.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 779aa MW: 85896.5 Da PI: 5.6797

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026427001.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.5	7.2e-06	474	494	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f+++ G+C+ d+CkF+H+ XP_026427001.1 474 YCEFYLK-GICQKRDSCKFSHD 494 5****.***********7 PP
2	zf-CCCH	19	2.6e-06	528	548	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+++a +G C +Gd+C F+H XP_026427001.1 528 PCSNYATSGSCFRGDKCLFSH 548 7******************** PP

Sequence ? help Back to Top
Protein Sequence Length: 779 aa Download sequence
MRNQTLITSM GEVIFHSRFR HRRSHLKSKT VDTLLKIISL CADDDQEESQ ISSPIVSDAL 60 NSGVRRNDSE NELVKDKNVE VLLGECEKLS IVNDLSVDDY SIENENLLTE NVNWAMASNL 120 LSDENVEPLG VEDSRILDGV ASSVVKNCSD NNIEEPQQGN VDEIKVVDEH VTDEIREPIR 180 ITEDMQMQSS SSEQNVVNGV GGESQWGEMG LTEPVNLDSS IRCLTDMDIE DDEIPDGLGL 240 YNEFVSLIHE GLAQNEEKSG GEDHIYYEVI KEREVENEHQ DDTGAEENHM SSTCIQGEIQ 300 LKTNGGKLDR NLKRGYGDDL LQGAGDSGKE NDEANVDAIT KRVCLSDRNL KRGYGDDWLQ 360 EVGDSGRENS KSKAAAATEE VGLCNRKLER GYEGDWLRDS RTSGKGNGGA KATETTKKLQ 420 NTKVGEKRPI ILSKEIKAKK KMNERKKRAQ TRKEQGVKRL RIEPPISKPK VPKYCEFYLK 480 GICQKRDSCK FSHDTTPLTK SQPCKFLALQ QCLKGDDCPF DHQLAKYPCS NYATSGSCFR 540 GDKCLFSHKI GKTSKPYDVS PTEAVSQPLP NNLNSKSSLN TKNISPCTLN IISSGASLKT 600 PSSTGNQFLK NPEQSVLGKL RPPAQPPKGV TLLSFSKTPP NNSSNKADSN STEASTRKDQ 660 ESLKPPPSLD ELFQKNTTST PSSASQYSQN PLQNVQNKNS AKRAPSSTLN FAAKYESEMK 720 KNRSKTPTGL STTNTTTDSS KTPTSTASSS IDNIQNRLLK ASPLLQEFLF GFGGTDGKL

Sequence ? help Back to Top

Protein Sequence Length: 779 aa Download sequence

MRNQTLITSM GEVIFHSRFR HRRSHLKSKT VDTLLKIISL CADDDQEESQ ISSPIVSDAL  60
NSGVRRNDSE NELVKDKNVE VLLGECEKLS IVNDLSVDDY SIENENLLTE NVNWAMASNL  120
LSDENVEPLG VEDSRILDGV ASSVVKNCSD NNIEEPQQGN VDEIKVVDEH VTDEIREPIR  180
ITEDMQMQSS SSEQNVVNGV GGESQWGEMG LTEPVNLDSS IRCLTDMDIE DDEIPDGLGL  240
YNEFVSLIHE GLAQNEEKSG GEDHIYYEVI KEREVENEHQ DDTGAEENHM SSTCIQGEIQ  300
LKTNGGKLDR NLKRGYGDDL LQGAGDSGKE NDEANVDAIT KRVCLSDRNL KRGYGDDWLQ  360
EVGDSGRENS KSKAAAATEE VGLCNRKLER GYEGDWLRDS RTSGKGNGGA KATETTKKLQ  420
NTKVGEKRPI ILSKEIKAKK KMNERKKRAQ TRKEQGVKRL RIEPPISKPK VPKYCEFYLK  480
GICQKRDSCK FSHDTTPLTK SQPCKFLALQ QCLKGDDCPF DHQLAKYPCS NYATSGSCFR  540
GDKCLFSHKI GKTSKPYDVS PTEAVSQPLP NNLNSKSSLN TKNISPCTLN IISSGASLKT  600
PSSTGNQFLK NPEQSVLGKL RPPAQPPKGV TLLSFSKTPP NNSSNKADSN STEASTRKDQ  660
ESLKPPPSLD ELFQKNTTST PSSASQYSQN PLQNVQNKNS AKRAPSSTLN FAAKYESEMK  720
KNRSKTPTGL STTNTTTDSS KTPTSTASSS IDNIQNRLLK ASPLLQEFLF GFGGTDGKL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	720	726	KKNRSKT