PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026425500.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family ARF
Protein Properties Length: 695aa    MW: 77450 Da    PI: 5.6644
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026425500.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.21.5e-23131232199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++ +k+a+e        +   + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +
  XP_026425500.1 131 FCKILTASDTSTHGGFSVLRKHANESlppldmtQ--ATPTQELIAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL--RGE 221
                     99*********************999****9543..445569************************************************..449 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     +++l+v+v+r+
  XP_026425500.1 222 NGNLRVGVRRH 232
                     999******97 PP
2Auxin_resp98.31.1e-32257336183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha+stk+ F v+ +Pr+  s+F++ ++k++++lk+ +svGmRfkm+fe+eds+err+sGt++g++d++p +W++SkWrsLk
  XP_026425500.1 257 ASHAVSTKTLFIVYNKPRT--SQFIIGLNKYLESLKNGFSVGMRFKMRFEGEDSPERRFSGTIIGTNDVSP-QWSDSKWRSLK 336
                     789***************6..9*************************************************.*********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    
MAFMFDNSSG FAGEVQNNTG YGCDDLYSEL WRACAGPLVD VPKIGERVYY FPQGHMEQLE  60
ASTNEELVQR IPLFNLPSKI LCRVVHIELL AEQETDEVYA RVTLQPEDDP NEPNSPDPCV  120
QEPPREGVQS FCKILTASDT STHGGFSVLR KHANESLPPL DMTQATPTQE LIAKDLHGYE  180
WRFKHIFRGQ PRRHLLTTGW STFVTSKRLV AGDTFVFLRG ENGNLRVGVR RHARQQNNMP  240
SSVISSQSMH LGVLATASHA VSTKTLFIVY NKPRTSQFII GLNKYLESLK NGFSVGMRFK  300
MRFEGEDSPE RRFSGTIIGT NDVSPQWSDS KWRSLKVQWD EPCSTPRPDR VSPWEIEPFV  360
ASPAPPKRIQ PLVSKNKRLR ISTDLPIHGT TASSVASPLW YPGATQSNEV TQSSGMDIQS  420
SETQSIWLPK QNESMGNFVN SNGITRIQRE SLGNASLDLF QDDRTASMWS GHLGYSNADH  480
SLITKNDHMQ DQVESEKKSE TPSGYRLFGI ELINNTNTPA NIVKEPVNDI TVSSAIAEIT  540
GPSTLSGSES DPQSALSNAS KEQQQVLLQA QPKSFSTATR SRTKVHMQGI AVGRAVDLTT  600
LDGYDQLINE LEEMFEIKGE LSPRDKWEVV FTDDEGDMML VGDDPWLEFC KMVKKIFIYS  660
SQEVRRMSPG CKLVSSLGGG EGTLVSLDSN LKTDK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0ARF family protein