PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026424867.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

HD-ZIP

Protein Properties

Length: 312aa MW: 35602.8 Da PI: 8.2547

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026424867.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.9	3.5e-18	146	199	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ +++k+q Le+ F++n++++ +++ LAk+l+L rqV vWFqNrRa+ k XP_026424867.1 146 KKLRLSKDQSALLEDSFKENNTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 199 566799**********************************************98 PP
2	HD-ZIP_I/II	126	1.7e-40	145	234	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q++lLE+sF+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l XP_026424867.1 145 NKKLRLSKDQSALLEDSFKENNTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRSCENLAEENRRLQKEVQELR-AL 234 59*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence
MVGMEDLGLS LSLSSTNHHH NLNALQLNLM PTSSPFSHQQ QQHHQKSSPW INMEQNLEMY 60 RGETRSFLRG IDVNRMPQKT MISTIDNEEE EGGNSSPNST LSSLSGKRSL RDLEGGSEEN 120 YDMERACSRG ISDEEDGGSD TRNSNKKLRL SKDQSALLED SFKENNTLNP KQKVALAKQL 180 NLRPRQVEVW FQNRRARTKL KQTEVDCEFL KRSCENLAEE NRRLQKEVQE LRALKMSPQF 240 YMQMTPPTTL TMCPSCERVA TSAVDHPPQQ HTHQMMSSSP HNHHQRPNSA INNRVTATQA 300 RSMADRSMLS RV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	194	202	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	1e-78	HD-ZIP family protein