PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026424712.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

LBD

Protein Properties

Length: 240aa MW: 26203.5 Da PI: 8.2276

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026424712.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.5	4.1e-42	46	145	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++l++el+ XP_026424712.1 46 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPENQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQSELN 140 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_026424712.1 141 VVRAE 145 99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence
MSREREIFEH EVGKKIKREA DAASISDRMG RRPLLGPPGT LNTITPCAAC KLLRRRCAQE 60 CPFSPYFSPH EPQKFASVHK VFGASNVSKM LMEVPENQRA DAANSLVYEA NVRLRDPVYG 120 CMGAISALQQ QVQSLQSELN VVRAEIIKYR YREVSSTLSH NINNHNSHHA LISPSGVISV 180 SPPPPPSSSV SVTNHDVPPP PPPPPPSTHP DASSSSMYTT PPSSATDYSS ISNENVSYFG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	1e-78	LBD family protein