PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026422053.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family ARF
Protein Properties Length: 816aa    MW: 90015.3 Da    PI: 6.0125
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026422053.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.81.2e-24163264199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   + ++
  XP_026422053.1 163 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGMVWKFRHIYRGQPRRHLLTTGWSAFVNNKKLVSGDAVLFL--RGED 254
                     99****************************963.3445679************************************************..4499 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+++v+r+
  XP_026422053.1 255 GELRLGVRRA 264
                     99*****997 PP
2Auxin_resp108.95.4e-36289370182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     +a+a++ k+ F++ Y Pr+s+seF ++++k++k +  ++s+GmRfkm+feteds e+r++G+++g+s++dpvrWp+SkWr+L
  XP_026422053.1 289 VAKAVAAKTLFHINYTPRVSPSEFLIPFQKFLKGFGLSLSIGMRFKMRFETEDSTEQRCTGMIAGISEMDPVRWPGSKWRCL 370
                     6899*****************************************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 816 aa     Download sequence    
MGGLIDLNNI LTEDEDDDTT TTTLLLSSSS PSSTTTPPPS VCLELWHACA GPHISLPKKN  60
SLVVYLPQGH LEHISQIPPS LVYDLPPHVF CRVVDVALRA ELTTDEVYAQ VSLIPDSEVE  120
QKLKGNQMEE NMVFIDEEEI EGAGGLSNNK SSSISSTTTP HMFCKTLTAS DTSTHGGFSV  180
PRRAAEDCFP PLDYKQQRPS QELVAKDLHG MVWKFRHIYR GQPRRHLLTT GWSAFVNNKK  240
LVSGDAVLFL RGEDGELRLG VRRATQYKSG GSFSVFGSQT CNTSTLTSVA KAVAAKTLFH  300
INYTPRVSPS EFLIPFQKFL KGFGLSLSIG MRFKMRFETE DSTEQRCTGM IAGISEMDPV  360
RWPGSKWRCL LVRWDDNVEM TRQNRVSPWE IEPSSSFSGS GNLSPPGAKR AKIRLPAQIA  420
DFPAPNGGGY LDFGESFRFQ KVLQGQEILG LNPSYDGYDV QNHQPFGIRR CDPGSNSNGM  480
AGILNGVKVL SGTSDIPNKG GFGESARFPK VLQGQELYSK APQMRGLVDN RSRDSGEFGY  540
LDGVHRSTNG SAWPAMLHGY SDVQTRAPSV KVSSPSSVLM FQQASTRAAN PGHAYAFNNN  600
HEKEDSASMF APELWKEHQL MNFMHPPTSF VNRAGLMGER GLATSRNGCR LFGFPLTEET  660
HVANEEDFST TPITSPSSNE NLNPDIPYVA CTENYLDPTS SAKAFGQRCT KILQVHKQGS  720
VAGRAIDLTK LEGYPDLISE LERLFNMEGL LNDPKKGWQV VYTDQEDEMM LIGDGPWKEF  780
CNIVSKILIY TRNQEVVEMD NNGNSSEGEA AIFSIP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0ARF family protein