PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_026421712.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
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Family | C3H | ||||||||
Protein Properties | Length: 488aa MW: 51666.9 Da PI: 7.9049 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.7 | 1.5e-11 | 63 | 88 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C +++rtG C yG rC+F+H++ XP_026421712.1 63 GEPNCVYYMRTGSCGYGIRCRFNHPR 88 5799********************96 PP | |||||||
2 | zf-CCCH | 43.1 | 7.2e-14 | 109 | 134 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C++f++tGtCk+G++CkF+H++ XP_026421712.1 109 GEPVCQYFMKTGTCKFGSSCKFNHPK 134 6799********************96 PP | |||||||
3 | zf-CCCH | 35.4 | 1.9e-11 | 155 | 180 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G++CkF+H++ XP_026421712.1 155 GEKECSYYIKTGQCKFGETCKFHHPQ 180 7899********************97 PP | |||||||
4 | zf-CCCH | 36.2 | 1e-11 | 313 | 337 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++Cr+++rtG CkyG+ C+++H+p XP_026421712.1 313 LPECRYYMRTGDCKYGSMCRYHHPP 337 689********************97 PP | |||||||
5 | zf-CCCH | 32.8 | 1.2e-10 | 358 | 382 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C ffa++G Ck+G++Ck+ H++ XP_026421712.1 358 APPCTFFAQYGVCKFGPTCKYDHPM 382 689********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 488 aa Download sequence |
MHSRIPRMEG TNTDPPSIDW NNNTGVGVVV SETGLEESMW QLGLGGGGRR NTTSGSSYPE 60 RLGEPNCVYY MRTGSCGYGI RCRFNHPRDR TLALGAVRQG EADYPEREGE PVCQYFMKTG 120 TCKFGSSCKF NHPKFEGGTG NAVLLNYYGY PLRPGEKECS YYIKTGQCKF GETCKFHHPQ 180 PSSPTVPAPA PEFYQAVQSS LVPSTQQFGG VPASWQVGRP PMMPGSFVQG TYGSVLVSGG 240 MVPISGWSPY PGSVGQVASP SNQPTFGAGS PYGVTRLSPS APAYTGAPPP LPTSAAISSS 300 GEKETVYPDR PGLPECRYYM RTGDCKYGSM CRYHHPPEFI APNTMVLSPM GLPLRPGAPP 360 CTFFAQYGVC KFGPTCKYDH PMGTLSYSPS ASSLTDMPVA PYPVGSSPTT LAPSSSSSEL 420 RQELITGSSK ESFITRVPSS ENASSGSVGS IFSKSSIVPH SSLPLAGQSS APSTGSSAGH 480 DGEIAGSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-143 | C3H family protein |