PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026420489.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family C3H
Protein Properties Length: 352aa    MW: 39832.8 Da    PI: 8.2043
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026420489.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.39.7e-07143162626
                     -SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                     C  f++ G Ck Gd C +aHg
  XP_026420489.1 143 CTEFRK-GSCKKGDACEYAHG 162
                     999***.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    
MMLREAAANQ TIPTIQIPQN WSHYLDNPTT AQMILSHHLP VSGIPSSSTT SSLSEVLLTA  60
LNRYNKLNVT DTNTTDISGG GGGGCVTVYP HDYYCDEFRM YDFKVRRCTR ADQHEWVDCP  120
YVHPDEKARR RDPVRYNYSA TGCTEFRKGS CKKGDACEYA HGVFESWLHP DRYRTQACKD  180
GIDCRRKICF FAHTVEQLRV VSTQRNAPML TESPRSSYDG SPIRNGLESY FMKVSAAAAA  240
SPTSTLMMHS SQSAPMSPMS PVSGYCSPFR ESPRRSLFKN LPSTPNRSVA RSSDFWDLER  300
PSFEEEQMMQ RVESGRKVRE SLLAKLIQEN SFKRVDSFNP TPDVGWVSDL LK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.15e-70C3H family protein