PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026420141.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family ARF
Protein Properties Length: 476aa    MW: 54076.9 Da    PI: 6.3325
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026420141.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B379.73e-25211312199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+ltpsd++++g +++ +++a+e+      ++++++ ++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD+++F   + ++
  XP_026420141.1 211 FCKILTPSDTSTHGGFSVLRRHANEClppldmSQQPPC-QELVAKDLHGVEWRFRHIYRGQPKRHLLTSGWSTFVNSKKLVAGDTFIFI--RAED 302
                     99*****************************7555556.5*************************************************..4599 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+v+++r+
  XP_026420141.1 303 GELRVGFRRA 312
                     *******997 PP
2Auxin_resp101.41.2e-33337418182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     a+ha+st+s+F+v+Y+Pr+s+seF +++++++++++++++vG+Rfkm+++ e+++e r sGt vg+++ dpv+Wp S+W++L
  XP_026420141.1 337 ASHALSTGSMFSVYYRPRTSPSEFLIPYKQYMNSVRSSFAVGTRFKMRIDREEAPEERPSGTLVGIEEDDPVHWPCSQWKCL 418
                     789******************************************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    
MPSQQTSQHT PTKRHVSKSP AIKKKQKNQP SIELDEEHDT LEALSDDDEE CGETDTDLDE  60
EEPDRYEEGK SDRQNMMMQK YKIGILNTKL EGDETFKIED ERDGIYGALW NACAGPSVKI  120
PRIGEKVFYF PQGHLEQVEA YTNQRTSSQM PVYDLPSKIL CRVIYVQLKA EMESDEVFAQ  180
VTLVPDSKQD EPGINKEKLL FPPKNTKVYS FCKILTPSDT STHGGFSVLR RHANECLPPL  240
DMSQQPPCQE LVAKDLHGVE WRFRHIYRGQ PKRHLLTSGW STFVNSKKLV AGDTFIFIRA  300
EDGELRVGFR RASSKMQSYP STSVSSHTMQ LGILATASHA LSTGSMFSVY YRPRTSPSEF  360
LIPYKQYMNS VRSSFAVGTR FKMRIDREEA PEERPSGTLV GIEEDDPVHW PCSQWKCLVA  420
HWDEPSSSVP RPLRISPWMI EPLSAATNMQ QVQSRTKRLR TSQASPDESS TLCNDG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.41e-174ARF family protein