PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_026419710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
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Family | C3H | ||||||||
Protein Properties | Length: 442aa MW: 48203.4 Da PI: 8.5953 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.9 | 4.1e-09 | 52 | 77 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ C ++ rtG C++G +C+F+H+p XP_026419710.1 52 GEQDCTYYIRTGLCRFGMTCRFNHPP 77 6789********************97 PP | |||||||
2 | zf-CCCH | 38.8 | 1.5e-12 | 98 | 122 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ XP_026419710.1 98 QPECQYYLKTGTCKFGATCKFHHPR 122 799********************96 PP | |||||||
3 | zf-CCCH | 33.8 | 5.6e-11 | 145 | 168 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C +++rtG+Ck+G++Ck++H++ XP_026419710.1 145 QECAYYLRTGQCKFGNTCKYNHPQ 168 58********************97 PP | |||||||
4 | zf-CCCH | 38.5 | 2e-12 | 302 | 327 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ C+F+H++ XP_026419710.1 302 DQPECQFYMKTGDCKFGAVCRFHHPR 327 689*********************96 PP | |||||||
5 | zf-CCCH | 40.1 | 6.1e-13 | 347 | 373 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ XP_026419710.1 347 PGEPLCIFYSRYGICKFGPNCKFDHPM 373 589**********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence |
MDYDARIQMS RGIVVTEGGS SLSPPLDEET LWQLNLRANE AMDPGPYPER PGEQDCTYYI 60 RTGLCRFGMT CRFNHPPNRK LAIAAARMKG GYPERVGQPE CQYYLKTGTC KFGATCKFHH 120 PRDKAGIAGR VLLNILGYPL RTNEQECAYY LRTGQCKFGN TCKYNHPQPS SSMVSLRGSP 180 VYPAVQSPTT PGQQSYPGGI TNWVSRASFI ASPRWQGPSS YAPLILPQGV VPVQGWNAYA 240 LGSGSSSESQ QQTSGSSQFY GTTRPSDTTS VGVQGFSSFR SGSAPSGIYA LQRENVFPER 300 PDQPECQFYM KTGDCKFGAV CRFHHPRERL IPIPNCLLSP LGLPLRPGEP LCIFYSRYGI 360 CKFGPNCKFD HPMGPFSFGI SASSSVDVPI VRRLLGSSAG SAALPLASDG SVEAGSGRPR 420 RLSLSEARQM PSSDENIDPE VS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-158 | C3H family protein |