PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026419020.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family C3H
Protein Properties Length: 311aa    MW: 32999.4 Da    PI: 9.823
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026419020.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.61.6e-06108131326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     t+ C+ +     Ck+Gd+C+F+Hg
  XP_026419020.1 108 TKMCSKYNSAEGCKFGDKCRFSHG 131
                     778888888889***********9 PP
2zf-CCCH36.67.6e-12278302126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC +f++ G C +GdrC+FaHg
  XP_026419020.1 278 FKTKLCENFSK-GSCTFGDRCHFAHG 302
                     69*********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    
MDFGGARKRG RPDAALNSNG GFKRNKQETE TFTPGIGSKS KPCTKFFSTS GCPFGEGCHF  60
LHYVPGGIHA VAQMTNLGGN QSHQPPSRNP LGPPPMMADV TSPSSARTKM CSKYNSAEGC  120
KFGDKCRFSH GDKEFGKLIG SPYEDPRVMG IPPHLMGRMP NRYEQQPPPP QSLAAAASFG  180
ASATAKISVD ASLAGAIIGK GGVNSKHICH LTGAKLAIRE HESDPSLRNI ELEGTFDQIK  240
QASAMVRELI VNVGAATAAM KNRQPHAATA PAPSANNFKT KLCENFSKGS CTFGDRCHFA  300
HGASELRKSG V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-50C3H family protein