PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_026418000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
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Family | LBD | ||||||||
Protein Properties | Length: 235aa MW: 25393.5 Da PI: 6.6621 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.1 | 1.6e-39 | 38 | 139 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC ++C++apyf ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dP+yG+v++il+lqqq+++l+ael XP_026418000.1 38 PCGACKFLRRKCISGCIFAPYFGSDQgAARFAAVHKVFGASNVSKLLLHIPLNQRHDAVITISYEAQARLSDPIYGCVSTILALQQQVASLQAEL 132 7***********************9989******************************************************************* PP DUF260 95 allkeel 101 ++++++l XP_026418000.1 133 SMVQSQL 139 ***9985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence |
MDEHQGDDNS GMPPPEGTRR GGMGKRVAPP FSSATSAPCG ACKFLRRKCI SGCIFAPYFG 60 SDQGAARFAA VHKVFGASNV SKLLLHIPLN QRHDAVITIS YEAQARLSDP IYGCVSTILA 120 LQQQVASLQA ELSMVQSQLL SSRLAVANAL QSSQQQQQVA VLQPAYSNNS SSSNNLVNLT 180 STFPSNFDLT GETVPSGSLI NKTFQQSVPP IQDEEEDEEE SRHPVIFTNQ ILNRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 5e-57 | LBD family protein |