PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026417879.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family MIKC_MADS
Protein Properties Length: 301aa    MW: 34261.9 Da    PI: 9.653
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026417879.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.41.1e-293686151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien + rqvtfskRr+g+lKKA+ELSvLCdaeva+iifsstgkl+e+ss
  XP_026417879.1 36 KRIENATSRQVTFSKRRAGLLKKAQELSVLCDAEVALIIFSSTGKLFEFSS 86
                    79***********************************************96 PP
2K-box59.51.4e-201052006100
           K-box   6 gks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     ++s +e   + + ++e++ Lk+ei++L+ ++ ++lG++L  L lkeLq+Le+qL++++  ++++K++ll++++++++ +e+++  en+ Lrk++e
  XP_026417879.1 105 TTSlVEYDPERQQSKEISILKDEISKLRMTHLRMLGKELMGLGLKELQHLEDQLNEGMLLVKARKDNLLYDELDQSRLQEERAVMENRILRKQVE 199
                     444444445566789******************************************************************************98 PP

           K-box 100 e 100
                     e
  XP_026417879.1 200 E 200
                     7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MVQITTTTPG RREFTDTERK LEDRGRKMGR GKIEIKRIEN ATSRQVTFSK RRAGLLKKAQ  60
ELSVLCDAEV ALIIFSSTGK LFEFSSSGMK RTLSRYNKCQ DTSETTSLVE YDPERQQSKE  120
ISILKDEISK LRMTHLRMLG KELMGLGLKE LQHLEDQLNE GMLLVKARKD NLLYDELDQS  180
RLQEERAVME NRILRKQVEE LQALVPSTER TRPPYLEFHS MDRKPSSHTK HGLLSPKGVC  240
HCSSKKRSSE RHDDSDTSLH LGLAPDGYYK KKAAERASAE RVSAERASSS SNDSDTPMAL  300
S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.12e-65MIKC_MADS family protein